PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe4G105500.3.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 878aa MW: 99290 Da PI: 6.7925

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe4G105500.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.1	1.1e-16	62	131	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Y++YA+++GFs+r+ + ++sk + r+fvCs+eg ++++ ++ C+a+lk+++++++kw+v k+++eHnH+ Aqcoe4G105500.3.p 62 YYDAYARRMGFSIRVGQYSRSKPDV----REFVCSREGLKRKNADS--------------CNAMLKIERKDSDKWVVLKFVKEHNHST 131 8*****************96666....*******998877..............************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.7E-13	62	131	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.8E-31	268	360	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.449	548	584	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.1E-11	548	582	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.5E-9	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 878 aa Download sequence Send to blast
MDSQVIDEEG ILGGSDVRIQ EGEEERSTEN SSDKELNSQD EEGSGEPHVG MEFESEDAAK 60 SYYDAYARRM GFSIRVGQYS RSKPDVREFV CSREGLKRKN ADSCNAMLKI ERKDSDKWVV 120 LKFVKEHNHS TVTPSKVHYL RPRRHFAGAA KNVPETYEGV GVSADGVMFM SMDGNRVSVE 180 PNRAARNVTP VEASRPARSA GSTSYSRTSR KKSLGKDAQN LLDYFKRMQA ENPGFFYAIQ 240 LDDENHMTNV FWADARSRTA YGHFGDAVTF DTMYRPNQYR VPFAPFTGVN HHGQMVLFGC 300 ALIFDESETS FLWLFKTWLE AMAGRPPVSI TTDQDRAIQA AVTQVFPGTR HCICKWHILR 360 EGQERLGHVC HTHPTFQGEL YNCINLTETI QEFELSWSSL IDKYDLRNND WLQALYSARR 420 HWAPVYFRDT FFAAISVKQG YESVSSFFDG YVNQQTTLPL FFRQYERALE NWFEKELGAD 480 FETICTTPVL KTPSPMEKQA ANLYTRKIFA KFQDELVETF VYTANKIEGD GAISTFRVAK 540 FEDDDKDYTV TLNVPEMRAS CTCRMFEFSG ILCRHVLTVF TVTNVLTLPS HYILKRWTRN 600 AKIVSGLDER QIEPQINESM TLRYNTLCRE AIKYADEGAI AVETYNVVMS ALKEAAKKIA 660 TVKKSVARVA PPSSHNTGNN HEDGNRKNPT SASDMTPLLW PRQDEVMRRF NLNDAGIPTP 720 VADLNLPRMA PVSLHGVDGP PDHTAVLPCL KSMTWIMENK NSTPANRVAV INLKLQDYSK 780 SPSGESEVKF QLSRLTLEPM LRSMAYIGEQ LSTPANRVAV INLKLQDAES TSGESEVKFQ 840 VSRDTLGAML RSMAYIREQL SNVGEPQSDP SSKKQRL*

Sequence ? help Back to Top

Protein Sequence Length: 878 aa Download sequence Send to blast

MDSQVIDEEG ILGGSDVRIQ EGEEERSTEN SSDKELNSQD EEGSGEPHVG MEFESEDAAK  60
SYYDAYARRM GFSIRVGQYS RSKPDVREFV CSREGLKRKN ADSCNAMLKI ERKDSDKWVV  120
LKFVKEHNHS TVTPSKVHYL RPRRHFAGAA KNVPETYEGV GVSADGVMFM SMDGNRVSVE  180
PNRAARNVTP VEASRPARSA GSTSYSRTSR KKSLGKDAQN LLDYFKRMQA ENPGFFYAIQ  240
LDDENHMTNV FWADARSRTA YGHFGDAVTF DTMYRPNQYR VPFAPFTGVN HHGQMVLFGC  300
ALIFDESETS FLWLFKTWLE AMAGRPPVSI TTDQDRAIQA AVTQVFPGTR HCICKWHILR  360
EGQERLGHVC HTHPTFQGEL YNCINLTETI QEFELSWSSL IDKYDLRNND WLQALYSARR  420
HWAPVYFRDT FFAAISVKQG YESVSSFFDG YVNQQTTLPL FFRQYERALE NWFEKELGAD  480
FETICTTPVL KTPSPMEKQA ANLYTRKIFA KFQDELVETF VYTANKIEGD GAISTFRVAK  540
FEDDDKDYTV TLNVPEMRAS CTCRMFEFSG ILCRHVLTVF TVTNVLTLPS HYILKRWTRN  600
AKIVSGLDER QIEPQINESM TLRYNTLCRE AIKYADEGAI AVETYNVVMS ALKEAAKKIA  660
TVKKSVARVA PPSSHNTGNN HEDGNRKNPT SASDMTPLLW PRQDEVMRRF NLNDAGIPTP  720
VADLNLPRMA PVSLHGVDGP PDHTAVLPCL KSMTWIMENK NSTPANRVAV INLKLQDYSK  780
SPSGESEVKF QLSRLTLEPM LRSMAYIGEQ LSTPANRVAV INLKLQDAES TSGESEVKFQ  840
VSRDTLGAML RSMAYIREQL SNVGEPQSDP SSKKQRL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010251622.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A1U7ZFE8	0.0	A0A1U7ZFE8_NELNU; protein FAR1-RELATED SEQUENCE 3
STRING	XP_010251622.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Aqcoe4G105500.3.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]