PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe4G126800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Protein Properties

Length: 149aa MW: 16430 Da PI: 10.1806

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe4G126800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.9	4.9e-10	81	148	2	82
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 +k++++s+v+ +l lp f+ +h ++ + e+g +W+ k+ k+ + l++GW++F+ a++L gD +vF Aqcoe4G126800.1.p 81 VKQMLQSHVTGGFWLGLPSLFCGTHL-PE--------TGEDGDKWSTKF--LAKKTG--LSGGWRGFAIAHKLVHGDALVF 148 699*****************8883.32........4799****..555444..9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.3E-8	75	148	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-12	76	148	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.75E-16	78	148	No hit	No description
Pfam	PF02362	5.1E-8	81	148	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.137	106	148	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MNLRGMHADQ KVRANLKPNQ MVLQYACLMS PRMVGSWVPI GITVHRDHSN RVYADSESLV 60 DAIERAEVLK SKLQNGFRSL VKQMLQSHVT GGFWLGLPSL FCGTHLPETG EDGDKWSTKF 120 LAKKTGLSGG WRGFAIAHKL VHGDALVF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022144182.1	1e-40	B3 domain-containing protein At5g42700-like
Swissprot	Q1G3M3	1e-32	Y3918_ARATH; B3 domain-containing protein At3g19184
Swissprot	Q9FMZ4	1e-32	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A2G5D3N5	3e-54	A0A2G5D3N5_AQUCA; Uncharacterized protein
STRING	Aquca_028_00035.1	4e-55	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	5e-35	B3 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe4G126800.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]