PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G139800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 470aa    MW: 52950.7 Da    PI: 7.5002
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G139800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.3e-15122211198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k +++s+v k  ++ +p +f+++h  + + ++t+ l de+ +++  ++   k +    l++GWk+F+ a++L e+D +vF+l++ ++f  
  Aqcoe4G139800.1.p 122 FVKSMLRSHVIKGFWMGIPGQFCKAHL-P-KHDVTIPLVDENQEEFVTNYLLHKIG----LSGGWKGFAVAHKLVERDALVFQLIKATTF-- 205
                        89***********************95.3.3679****************555555....************************997777.. PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                         v+++r
  Aqcoe4G139800.1.p 206 QVHIIR 211
                        888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000180416IPR018247EF-Hand 1, calcium-binding site
SuperFamilySSF1019361.24E-21115211IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-18115211IPR015300DNA-binding pseudobarrel domain
CDDcd100175.26E-23120211No hitNo description
PROSITE profilePS5086310.292122213IPR003340B3 DNA binding domain
PfamPF023623.4E-14122211IPR003340B3 DNA binding domain
SMARTSM010191.7E-15122213IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MAADTSSEKE MEEEEFRMLI KSKEKKKNQG INEDQMTLAQ CFQSLQSSPK PQTSLSMVVL  60
NKPERPLRSV PSFEQVVLDK PAETPLSYEQ EQAFPDHDKV KLCAIQRAEE VRANLDPRFP  120
SFVKSMLRSH VIKGFWMGIP GQFCKAHLPK HDVTIPLVDE NQEEFVTNYL LHKIGLSGGW  180
KGFAVAHKLV ERDALVFQLI KATTFQVHII RAFSLDAIDG VIGFVTLDSD PKHSSTCKSI  240
KTSGKRVRKR RKIVSFADVE APTKEKFGSD SDDMGSEVLE CIKFLETSVE FKDVKDLESF  300
TIAVNGLVID SELSKNERTK YYELCCSQDA FLHDNLLAGI NMKLAAGAIS ETVNIANSIQ  360
SSKLGTCRDD YATWDNSLRA LEQLGMNVRF LRVRILLNIA YESEGTVDLK QYSEAIVGQA  420
RVKEEIRSME AKLVELEKAS KRMGTKIKNL EAKVRRNELK FQTQVSSPW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5C6M80.0A0A2G5C6M8_AQUCA; Uncharacterized protein
STRINGAquca_086_00041.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-42B3 family protein