PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G140600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 621aa    MW: 71940.2 Da    PI: 8.32
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G140600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.55.1e-1935121191
               FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        ++Yn+YA  +GFsvrk++s++s +  ++i+k++f+Cs+eg+ ++  +     +++r e r gC a+++++++ d+k+++tk+  +HnHel+p
  Aqcoe4G140600.1.p  35 DYYNSYAFVLGFSVRKKRSNSSeSIPRRIVKSQFCCSCEGTYKQVLTP----EKKRDERRFGCLAEFEIRLK-DEKYVLTKFIVDHNHELVP 121
                        69***************99999567889*************9998777....889999**************.*****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-1635121IPR004330FAR1 DNA binding domain
PfamPF105511.8E-33243336IPR018289MULE transposase domain
PROSITE profilePS509669.742497545IPR007527Zinc finger, SWIM-type
SMARTSM005753.0E-7520547IPR006564Zinc finger, PMZ-type
PfamPF044341.5E-6521543IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MEHSGSNVED LSKEPTRDVV PQLGMSFDTV KEAYDYYNSY AFVLGFSVRK KRSNSSESIP  60
RRIVKSQFCC SCEGTYKQVL TPEKKRDERR FGCLAEFEIR LKDEKYVLTK FIVDHNHELV  120
PTWDSNLLRS HRSIQECEGG LMMKMHSAGL KQGQNYSYHC AEVGGPQNSK FTQADCNNLI  180
QRKRKEAFQK GDAQSLLEYF KNEKKKNKFF FYSIRHNEDN QITAVFFCDA RSRRDYGMFG  240
DAMCFDTTFK TNNYNMICAP IIGVNNHGQT IFFGCGLLDG ETTDAFIWLF SAFLEAMGGK  300
HPKTIFTDQA MAISNAIEAI FPGSSHRLCL WHLYQNALTH LSGVFAKFDT FSTQLKKCIY  360
EPETISEFEE YWDVMLEKYG LRDNVWLQGL YKSPGMTTTQ RSESINAFLK RFFGTTLVLR  420
EFVELYSQAM DHRRQKERVA ETNTKQTAAN LLSNWLVEKE ASKKYTRKVF KIFQDEYKKL  480
LDLRLNVEND DGEIRIYRVS EMGNGRRDRT LTYVPSKQEV RCSCRKFEFQ GILCSHALKL  540
FRELEFTSLP SCYYLKRWSK EAAPLFPINF ISFCMWFERV LVLVILHASR LPNCSCSCGI  600
NDGELFSVLF ALQIIRGDHS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2538470.0AC253847.1 Aquilegia coerulea clone COL01-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224311.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2P6SL240.0A0A2P6SL24_ROSCH; Putative transcription factor FAR family
STRINGEMJ255100.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-111FAR1-related sequence 5