PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G146900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 910aa    MW: 104724 Da    PI: 9.0107
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G146900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.79.3e-1935121191
               FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        ++Yn+YA  +GFsvrk++s++s +  ++i+k++f+Cs+eg+ ++  +     ++++ e r gC a+++++++ d+k+++tk+  +HnHel+p
  Aqcoe4G146900.1.p  35 DYYNSYAFVLGFSVRKKRSNSSeSIPRRIVKSQFCCSCEGTYKQVLTP----EKKQDERRFGCLAEFEIRLK-DEKYVLTKFIADHNHELVP 121
                        69***************99999567889*************9998777....7889999*************.*****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-1635121IPR004330FAR1 DNA binding domain
PfamPF105513.2E-32243336IPR018289MULE transposase domain
PROSITE profilePS509669.742511559IPR007527Zinc finger, SWIM-type
SMARTSM005753.0E-7534561IPR006564Zinc finger, PMZ-type
PfamPF044342.3E-6535557IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MEHSGSNVED LSKEPTRDVV PQLGMSFDTV KEAYDYYNSY AFVLGFSVRK KRSNSSESIP  60
RRIVKSQFCC SCEGTYKQVL TPEKKQDERR FGCLAEFEIR LKDEKYVLTK FIADHNHELV  120
PTWDSNLLRS HRSIQECEGG LMMKMHSAGL KQGQIYSYHC VEVGGPQNSK FTQADCNNLI  180
QRKRKEAFQK GDAQSLLEYF KNEKKKNKFF FYSIRHNEDN EITAVFFCDA RSRRDYGMFG  240
DAMCFDTTFK TNNYNMICAP IIGVNSHGQT IFFGCGLLDG ETTDAFIWLF SAFLEAMGGK  300
HPKTIFTDQA MAISNAIEAI FPGSSRRLCL WHLYQNALTH LSGVFAKFDT FSTQLKKCIY  360
EPETISEFEE YWDVMLEKYG LRDNVWLQGL YKSREKWGQV YARAFFCAGM TTTQQSESIN  420
AFLKRFFGTT LVLREFVELY SQAMDHRRQK ERVAETNTKQ TAANLLSNWL VEKEASKKYT  480
RKVFKIFQDE YKKLLDLRLN VENDDGEICI YRVSEMGNGR RDRTLTYVPS KQEVRCSCRK  540
FEFQGILCSH ALKLFRELEF TSLPSCYYLK RWSKEAVSEV IFDAYGEAIQ SDLDPMATAR  600
YSELSHISQL IVATSASCDS LFTYAKSKMQ QLLADLNAMA ISEKKNADKT SQMNTSNVCE  660
NSFQNLDEDP TLRNPKVKRT RGQQKKRFKP PYEKNIPQKK VASKKNDIVD KPARNETVVD  720
SPTVYRPCQK RNTVVVCHGT NRKAGRNHQW VPLVNKIGLS KPTLSSAPDR TYRGIGRLGG  780
MLDLDGMKNA DPWRTKYGTY TLREDHEDME LTYQINSARS IYMELWKKLL SLRANGYISK  840
LQCESETDNF VRIGTYVRSL GVRTSRMPDN DYVLQHSQAT KGSCSSSREA PKRTYVKVEK  900
YLNVFGEIA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2538470.0AC253847.1 Aquilegia coerulea clone COL01-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224311.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2P6SL240.0A0A2P6SL24_ROSCH; Putative transcription factor FAR family
TrEMBLM5Y1H30.0M5Y1H3_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ255100.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-122FAR1-related sequence 5