PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe4G168100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Protein Properties

Length: 907aa MW: 98863.3 Da PI: 7.6687

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe4G168100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.1	7e-18	362	459	1	96
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+l+ sd+++ grlvlpkk+ae++ ++++e++ l+++d +g +W +++++ +++s++yvl+ G + L++gD+v+F++ + Aqcoe4G168100.1.p 362 FEKTLSASDAGRIGRLVLPKKCAEAYfpTISQPEGVPLKVQDAKGSEWVFQFRFwpNNNSRMYVLE-GVTPCIQNMSLQAGDIVTFSRLD-P 451 99************************777779999***********99899999999.*******************765.7 PP EE..EEEE CS B3 89 efelvvkv 96 +++lv++ Aqcoe4G168100.1.p 452 DGKLVMGS 459 77676665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.5E-30	353	465	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.53E-19	359	457	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.31E-22	360	457	No hit	No description
Pfam	PF02362	6.0E-15	362	458	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.757	362	463	IPR003340	B3 DNA binding domain
SMART	SM01019	5.9E-19	362	462	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.991	592	642	IPR011124	Zinc finger, CW-type
Pfam	PF07496	6.7E-11	597	639	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 907 aa Download sequence Send to blast
MTSCSSSSSQ STAKICCFNL DCKEMKLDRS FRKAWRLRSG DFAELCDRCG TAYEEGRYCE 60 IFHINAAGWR SCESCRKPLH CGCIVSITGF ILLDAGGVEC MSCARKHSIV ASQSWSHTLK 120 NRSPLSVSNG ISGQWWHSAN ARNVGTSQSD LQARLAYEFD RSNGIERRVS SVPGIERAPK 180 DPSERVAPSS DVPVHQRNPG GDMVVALNAL RREEGTADAL PDPRHLPGES STVDARKGSI 240 VEPHLNNSVA AKCFDTHANS RVNTQSSSGK DPLVPSNDAN GSACVSGSQQ QRQTPSPPMA 300 NQCHGNLQNG GDTYTENQIR NGKARGDGRG RNQLLPRYWP KITDQELQQI SVDSNKIITP 360 LFEKTLSASD AGRIGRLVLP KKCAEAYFPT ISQPEGVPLK VQDAKGSEWV FQFRFWPNNN 420 SRMYVLEGVT PCIQNMSLQA GDIVTFSRLD PDGKLVMGSR KPSDASPSTQ DSRKSKNGNG 480 VSKLAESNLK DANTWSEIDK SGYIAKDALR AQSSVLPSKR KSSTLGLKNK RLQIENEDRI 540 ELKLTWEEAQ GLLRPACNHH PDSIVVVDGH EFEEYEEAPI LGKPTIFTTN NSGENIQWAQ 600 CEECSKWRKL PVDALLPSKW TCSDNLWDPK RSSCSSDQEL TDGQIQDLLS SSNDVASKKM 660 KSAKKDSESV EGSEGGLDTL ANVAILTEEA LPSLAQPPTT KHPRHRPGCS CIVCIQPPSG 720 KGPKHSDTCV CNVCTTVKRR FRTLMERRAK RPPENEAGTS RKKQQLVERV EPVDGLPTSS 780 NAKSGVNPEM FVDGNDDDDI SCRKPSSPFK GGIDLNIQPE REDDASPVSG SGSIRFVRDS 840 ADLYHKQQKL PSSSRNRDVN TSGGSAEVGG VENHGIGVPQ SCDPENGELN PPAPRPTWIP 900 ATSGTG*

Sequence ? help Back to Top

Protein Sequence Length: 907 aa Download sequence Send to blast

MTSCSSSSSQ STAKICCFNL DCKEMKLDRS FRKAWRLRSG DFAELCDRCG TAYEEGRYCE  60
IFHINAAGWR SCESCRKPLH CGCIVSITGF ILLDAGGVEC MSCARKHSIV ASQSWSHTLK  120
NRSPLSVSNG ISGQWWHSAN ARNVGTSQSD LQARLAYEFD RSNGIERRVS SVPGIERAPK  180
DPSERVAPSS DVPVHQRNPG GDMVVALNAL RREEGTADAL PDPRHLPGES STVDARKGSI  240
VEPHLNNSVA AKCFDTHANS RVNTQSSSGK DPLVPSNDAN GSACVSGSQQ QRQTPSPPMA  300
NQCHGNLQNG GDTYTENQIR NGKARGDGRG RNQLLPRYWP KITDQELQQI SVDSNKIITP  360
LFEKTLSASD AGRIGRLVLP KKCAEAYFPT ISQPEGVPLK VQDAKGSEWV FQFRFWPNNN  420
SRMYVLEGVT PCIQNMSLQA GDIVTFSRLD PDGKLVMGSR KPSDASPSTQ DSRKSKNGNG  480
VSKLAESNLK DANTWSEIDK SGYIAKDALR AQSSVLPSKR KSSTLGLKNK RLQIENEDRI  540
ELKLTWEEAQ GLLRPACNHH PDSIVVVDGH EFEEYEEAPI LGKPTIFTTN NSGENIQWAQ  600
CEECSKWRKL PVDALLPSKW TCSDNLWDPK RSSCSSDQEL TDGQIQDLLS SSNDVASKKM  660
KSAKKDSESV EGSEGGLDTL ANVAILTEEA LPSLAQPPTT KHPRHRPGCS CIVCIQPPSG  720
KGPKHSDTCV CNVCTTVKRR FRTLMERRAK RPPENEAGTS RKKQQLVERV EPVDGLPTSS  780
NAKSGVNPEM FVDGNDDDDI SCRKPSSPFK GGIDLNIQPE REDDASPVSG SGSIRFVRDS  840
ADLYHKQQKL PSSSRNRDVN TSGGSAEVGG VENHGIGVPQ SCDPENGELN PPAPRPTWIP  900
ATSGTG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	1e-63	340	465	2	127	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	737	750	KRRFRTLMERRAKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019055852.1	0.0	PREDICTED: B3 domain-containing protein Os07g0563300-like
Swissprot	Q0D5G4	0.0	Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBL	A0A2G5CCN1	0.0	A0A2G5CCN1_AQUCA; Uncharacterized protein
STRING	Aquca_063_00016.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Link Out ? help Back to Top
Phytozome	Aqcoe4G168100.1.p