PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe4G173500.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 649aa MW: 74041.1 Da PI: 8.6401

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe4G173500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.5	4.2e-08	12	56	48	91
FAR1 48 tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 ++++++ r tr++C a +++ ++ + w v + ++HnH lap Aqcoe4G173500.1.p 12 HKRRKKARRLTRCNCPAAMNIVYDDeLNMWTVCGFMSQHNHVLAP 56 3568899************9999899***********9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-5	12	56	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.2E-36	161	255	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.868	440	476	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.9E-6	451	478	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	3.1E-6	452	474	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence Send to blast
MGVRAGKWTN LHKRRKKARR LTRCNCPAAM NIVYDDELNM WTVCGFMSQH NHVLAPPGGS 60 HFLRSHRKVS LSNAVLAQNL YALGVSKKLV MDIIISKSGS HAAAGCTARD LYNQMNRARV 120 EHIIDGDANL VNSFLEDMNV RDPGFFKKIQ SQEDYKLFGD VLMFDSTYRT NRYDMPLVVF 180 AGVNNHRHTV IYALALMNNE TIDSYEWALK TFLAAMDGIA PKSVITDGDA AIRNAIENVF 240 PKSKHRLCVW HVVQNAITNV WTDGFVKGFV EAIFCKGPPD AFEKKWAELL IEYKTVAEQK 300 WVHNIYEKKE MWAEAYLREY FFVGCRSNQR CESINSVVRL CIKSGLSLIE LVDKLLQKIR 360 HIRYRDFEAK VNTTMTRSAQ IPNLTLIGEQ AETLYTRAGY EYLLKQLLHE LSYVVNESYQ 420 DGEDIIKYLV NRHIHPNAPA TVEYNRENDA YNCTCKLFER VGFLCRHILA VLKHTHVKAL 480 PKSCILHRWT REAKSSSLDF GTNPTTSCRL GFGLRLKELE EYSRDLFMWG CESVQRCTMV 540 KGHIAAFDKG EPEEVAQGFD ETPVPENPLG FEEEPVASTP PQSFPPDNIV DPQRDLVRRG 600 GPRKAKRKMF HQRTSTRCGI CHIVGHSRRT CPSNYLSLDF LNLGLVCL*

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence Send to blast

MGVRAGKWTN LHKRRKKARR LTRCNCPAAM NIVYDDELNM WTVCGFMSQH NHVLAPPGGS  60
HFLRSHRKVS LSNAVLAQNL YALGVSKKLV MDIIISKSGS HAAAGCTARD LYNQMNRARV  120
EHIIDGDANL VNSFLEDMNV RDPGFFKKIQ SQEDYKLFGD VLMFDSTYRT NRYDMPLVVF  180
AGVNNHRHTV IYALALMNNE TIDSYEWALK TFLAAMDGIA PKSVITDGDA AIRNAIENVF  240
PKSKHRLCVW HVVQNAITNV WTDGFVKGFV EAIFCKGPPD AFEKKWAELL IEYKTVAEQK  300
WVHNIYEKKE MWAEAYLREY FFVGCRSNQR CESINSVVRL CIKSGLSLIE LVDKLLQKIR  360
HIRYRDFEAK VNTTMTRSAQ IPNLTLIGEQ AETLYTRAGY EYLLKQLLHE LSYVVNESYQ  420
DGEDIIKYLV NRHIHPNAPA TVEYNRENDA YNCTCKLFER VGFLCRHILA VLKHTHVKAL  480
PKSCILHRWT REAKSSSLDF GTNPTTSCRL GFGLRLKELE EYSRDLFMWG CESVQRCTMV  540
KGHIAAFDKG EPEEVAQGFD ETPVPENPLG FEEEPVASTP PQSFPPDNIV DPQRDLVRRG  600
GPRKAKRKMF HQRTSTRCGI CHIVGHSRRT CPSNYLSLDF LNLGLVCL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5EJ87	0.0	A0A2G5EJ87_AQUCA; Uncharacterized protein
STRING	Aquca_007_00263.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-87	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe4G173500.1.p