PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G180200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 159aa    MW: 17879.4 Da    PI: 7.9022
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G180200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-051437323
                       ET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2  3 Cp..dCgksFsrksnLkrHirt.H 23
                       C+   C k+Fs+ ++Lk+H+r+ H
  Aqcoe4G180200.1.p 14 CSepGCWKPFSNVESLKVHLRScH 37
                       66669*****************66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0661237IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801437IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.6E-51437IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355324061IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MWDVLKTNFL EAICSEPGCW KPFSNVESLK VHLRSCHQYI HCKVCGTKQL KKNIKRHMGA  60
HESGCSSQRI KCSFEDCKSN LNQHIKLCTL SFAHLFVDMI DDGCGERFSY KHVRNNHEKS  120
GSHMYSKVTP SGQEDFALCQ GPVHLALLPP TSNGEDEP*
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251838.11e-41PREDICTED: transcription factor IIIA
RefseqXP_010251839.11e-41PREDICTED: transcription factor IIIA
RefseqXP_010251840.11e-41PREDICTED: transcription factor IIIA
RefseqXP_010251841.11e-41PREDICTED: transcription factor IIIA
SwissprotQ84MZ48e-32TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2G5F7C61e-45A0A2G5F7C6_AQUCA; Uncharacterized protein
TrEMBLA0A2G5F7F34e-46A0A2G5F7F3_AQUCA; Uncharacterized protein
TrEMBLA0A2G5F7G74e-47A0A2G5F7G7_AQUCA; Uncharacterized protein
STRINGAquca_002_01327.12e-46(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-34transcription factor IIIA