PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe4G189500.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 633aa MW: 72111 Da PI: 8.3437

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe4G189500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73	6.4e-23	63	149	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAke+GFsvrk ++kk+ n+ei+++++vC k+gk + +++ +++r+r r gCkakl v k+ +gk+ vt +++ HnH+l+ Aqcoe4G189500.1.p 63 EFYNAYAKEAGFSVRKWSEKKN-ANKEIIRKEYVCFKQGKGSLLEDA--EKSRRRGPLREGCKAKLAVAKSGNGKFAVTIFVEGHNHTLS 149 6*************999888.8888***********99888..888899999****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-20	63	149	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.6E-32	270	363	IPR018289	MULE transposase domain
Pfam	PF04434	2.0E-6	418	446	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.954	420	452	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0016	427	455	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence Send to blast
MDNLEPGSDL FEINGIGNNT ELEEVEMREN AEESFNYDII PPVANNLKPQ MGQDFSSLDD 60 VLEFYNAYAK EAGFSVRKWS EKKNANKEII RKEYVCFKQG KGSLLEDAEK SRRRGPLREG 120 CKAKLAVAKS GNGKFAVTIF VEGHNHTLST PRKTHLLRSH REGSSAQKCL SQQFSMVNIP 180 THQQYNFLGV QAGGFENIGC IQKDLYNYQR DVRKELKGHD AEMFRKYLKS EEEKNPSFTY 240 TIDVDDEQRI CRVFWADTTS RRDYALYGDV VVFDTTYNTN CYKLILAPLM GVNNHGQTII 300 FGCAFLSDET IHSFVWLFKQ FLQAMPGDAP KMIITDQDLA MTNAIAQTLP KTFHRYCSWH 360 ILNKFSEKLD AVKYRLCLVH GELLESFNYK FQIISETYTL RLYKTQRKNL ETDKGRQVSY 420 EKDLDHVSCS CNKFESMGIP CRHILAYLHK YTDFEKLPNE YILKRWSKST KSKTVIDHGG 480 MEIVDDRTYF LERSRLIQCC LGVVNKALTS EEAKQILIDA LSSAEEKINL LIASSGSEKK 540 DNYTVDYSTS GKRKKMVDCV TDVEMTEQAN CYREPNQARA KGCGKRFKGG KEKATGSGKK 600 FEGRLCKGCN QRGVGHDIRT CPKLAGVSLS QP*

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence Send to blast

MDNLEPGSDL FEINGIGNNT ELEEVEMREN AEESFNYDII PPVANNLKPQ MGQDFSSLDD  60
VLEFYNAYAK EAGFSVRKWS EKKNANKEII RKEYVCFKQG KGSLLEDAEK SRRRGPLREG  120
CKAKLAVAKS GNGKFAVTIF VEGHNHTLST PRKTHLLRSH REGSSAQKCL SQQFSMVNIP  180
THQQYNFLGV QAGGFENIGC IQKDLYNYQR DVRKELKGHD AEMFRKYLKS EEEKNPSFTY  240
TIDVDDEQRI CRVFWADTTS RRDYALYGDV VVFDTTYNTN CYKLILAPLM GVNNHGQTII  300
FGCAFLSDET IHSFVWLFKQ FLQAMPGDAP KMIITDQDLA MTNAIAQTLP KTFHRYCSWH  360
ILNKFSEKLD AVKYRLCLVH GELLESFNYK FQIISETYTL RLYKTQRKNL ETDKGRQVSY  420
EKDLDHVSCS CNKFESMGIP CRHILAYLHK YTDFEKLPNE YILKRWSKST KSKTVIDHGG  480
MEIVDDRTYF LERSRLIQCC LGVVNKALTS EEAKQILIDA LSSAEEKINL LIASSGSEKK  540
DNYTVDYSTS GKRKKMVDCV TDVEMTEQAN CYREPNQARA KGCGKRFKGG KEKATGSGKK  600
FEGRLCKGCN QRGVGHDIRT CPKLAGVSLS QP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5CLD2	0.0	A0A2G5CLD2_AQUCA; Uncharacterized protein
STRING	Aquca_046_00031.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-70	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe4G189500.1.p