PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G190200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 753aa    MW: 86716.7 Da    PI: 7.8692
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G190200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.95.3e-2163149190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fYn+YAk++GFsvrk ++kk+ +n+ei+++++vC kegk +  ++   +++r+r + r g ka+++v+k+++gk++vt +++ HnH+l+
  Aqcoe4G190200.1.p  63 EFYNAYAKHAGFSVRKWAEKKN-KNKEIIRKEYVCFKEGKCSIVEEV--EKSRRRGSVREGYKARIVVSKSSNGKFVVTLIVEGHNHPLS 149
                        6****************99998.7777*************9998766..99999**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1863149IPR004330FAR1 DNA binding domain
PfamPF105512.8E-31256349IPR018289MULE transposase domain
PROSITE profilePS5096610.472535571IPR007527Zinc finger, SWIM-type
PfamPF044342.5E-4547565IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
CYMDNIEPEN EFFEVNGQGN DMEEVAMGEN VDESSKCDII PQVPNDLKPM RGQEFSSLDE  60
VLEFYNAYAK HAGFSVRKWA EKKNKNKEII RKEYVCFKEG KCSIVEEVEK SRRRGSVREG  120
YKARIVVSKS SNGKFVVTLI VEGHNHPLST PRKTHLLRSH REVSSAHKCL SQQLSMVNIP  180
THQQYNFLGD LYNYNSDVRK ELKGHDAEMF REYLKSEEEK NPSFTYNIDV DDEQRICRAF  240
WADATSRRDY ALYGDVVVFD TTYDTNRYKL ILAPLMGVNN HGQTIIFGCA FLSDETISSF  300
IWLLKQCLLA MPGDAPKMII TDQDPAMTNA IAQTLPSTFH RYCSWHILNK FSEKLDAVKY  360
SVYYKEFYYC IWNSKSKEEF DLVSLELVQR SGLQDNKWLR SMFEIRLKWV PAYTKHVFSA  420
EMTSSQRAES SHSFFKKYVG EDNSMVDFMV QFDRGLQKQR HEALIADNKD VIEKPKLKML  480
NDILVQMVDI YTNEIFYKFQ SELLESFNYK FQLINETDTH ICRTQRKNVE IDKGRQVSYE  540
KDSDYVSCTC NKFESMYIPC RHVLAYLHKY TDFEKLPSHY ILKRLKKSAK SETVIDCTGI  600
EIVDNKSYFL ERSRLIQCCL GVVNKALTSE EAKKVLIDSL CSAEEKINLL VDSGRKEKKT  660
SSTCGKRTRE VVDNVADAEL AEQMNCEEVA TYREPNQVRA KGSGKRIKGG KEKTLGSSRK  720
AKGRLCKGCG ERGVGHDVRT CPKVVDASLS QP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020272573.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2G5CJ920.0A0A2G5CJ92_AQUCA; Uncharacterized protein
STRINGAquca_050_00023.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-104FAR1-related sequence 5