PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G205300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family Trihelix
Protein Properties Length: 383aa    MW: 43460.1 Da    PI: 6.207
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G205300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.51.3e-2673154286
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        W ++e++ Li++rre++  ++++k++k+lWe++s+kmre+gf rsp +C++kw+nl k++kk +++e++    +s ++ y+++le
  Aqcoe4G205300.1.p  73 WIQEEIRSLINFRREVDGLFNTSKSNKHLWEKISSKMREKGFDRSPAMCTDKWRNLLKEFKKARHQERGS---ASAKMTYYKELE 154
                        ********************************************************************95...556799***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-463134IPR009057Homeodomain-like
PROSITE profilePS500908.265129IPR017877Myb-like domain
SMARTSM007170.001769131IPR001005SANT/Myb domain
CDDcd122032.80E-2771136No hitNo description
PfamPF138373.1E-1972156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MNFYLELLFF VVIEPMYLSE KPHPVDFYMG EVRGMMIEIV DNGGLQSQQQ MILGESSGED  60
HEVKAPKKRA ETWIQEEIRS LINFRREVDG LFNTSKSNKH LWEKISSKMR EKGFDRSPAM  120
CTDKWRNLLK EFKKARHQER GSASAKMTYY KELEELLRER SKSASYKSPT SSKIDSYIQF  180
AEKGLGDSSL PFGPVEAGGR SSLNHETHVD HDGHPLTIAA ADAVAANVLP PWNWRSTPGN  240
GGESQLYGGR VITVKWGDLI KKIGIDGTAD AIKEAIKSAF GLRTRRAFWL EDEDNVVRSL  300
DRDMPLGTYS LHLDEGMTIK VCIFDESDRM SIQTEEKTLY TEDDFRDFLA HRGWTGLREM  360
DGFRSVDTLN DLRPGAIYQG GR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A3e-4667152186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00666PBMTransfer from GSVIVG01007522001Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248872.10.0PREDICTED: trihelix transcription factor GT-1-like
SwissprotQ9FX531e-175TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A2G5C1P50.0A0A2G5C1P5_AQUCA; Uncharacterized protein
STRINGAquca_123_00031.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-159Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]