PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G210500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 84aa    MW: 9390.39 Da    PI: 10.474
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G210500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.5e-091258347
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                       +WT+   +l+ +a +++ ++   +W  +a+ +g g++++++  r+ ++
  Aqcoe4G210500.1.p 12 SWTPKQNKLFEKALALFDKDtpdRWQNVAKAVG-GKSAEEVEQRFKNL 58
                       7********************************.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.856863IPR017884SANT domain
SMARTSM007171.3E-8961IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-51060IPR009057Homeodomain-like
SuperFamilySSF466892.42E-131167IPR009057Homeodomain-like
PfamPF002494.3E-81258IPR001005SANT/Myb domain
CDDcd001675.59E-71359No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MASSSRQSSS SSWTPKQNKL FEKALALFDK DTPDRWQNVA KAVGGKSAEE VEQRFKNLIE  60
DVQRIESGRV PFPNYRSNGT SNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-29179177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383186.13e-41protein RADIALIS-like 3
SwissprotQ1A1738e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2G5EAF31e-53A0A2G5EAF3_AQUCA; Uncharacterized protein
STRINGAquca_010_00512.12e-54(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.14e-31RAD-like 6