PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G218300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 793aa    MW: 91323.8 Da    PI: 8.3112
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G218300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.18.1e-2068157291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                        fYneYAk  GFsvrk++++    +g++ +r+f Cs+ g re + ++ ++++++ r  tr++C a +++  ++  + w v  + ++HnH lap
  Aqcoe4G218300.1.p  68 FYNEYAKFKGFSVRKDHKTVI--DGRTRRRRFICSCAGVREGKWTNlHKRRKKARRLTRCNCPAAMNIVYDDeLNMWTVRGFMSQHNHVLAP 157
                        9**************986665..999***************99998677788899*************9999899*************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-1768157IPR004330FAR1 DNA binding domain
PfamPF105513.5E-34231325IPR018289MULE transposase domain
PROSITE profilePS5096610.682506544IPR007527Zinc finger, SWIM-type
SMARTSM005752.9E-6519546IPR006564Zinc finger, PMZ-type
PfamPF044344.8E-6520542IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MSAFVDEFVE DFSDDSEAEG DNPRRRNADF LYKVGLRLQD EIHDDMGEIF YEDMLRARFK  60
TDEDAYFFYN EYAKFKGFSV RKDHKTVIDG RTRRRRFICS CAGVREGKWT NLHKRRKKAR  120
RLTRCNCPAA MNIVYDDELN MWTVRGFMSQ HNHVLAPPGG SHFLRSHRKV SLSNAVLAQN  180
LYALGVSKKL VMDIIISKSG SHAAAGCTAR DLYNQINRAR SQENYKLFGD VLMFDSTYRT  240
NRYDMPLVVF AGVNNHRHTV IYGLALMNNE TIDSYEWALK TFLAAMDGIA PKSVITDGDA  300
AIRNDIENVF PKSKHRLCVW HVVQNAITNV WTDGFVKGFV EAMFWSSHAF EKKWAELLIK  360
YKTVAEQKWV HNIYEKKEMW AEAYLREYFF AGCRSNQRWE SINSVVRLCV KSGLTLIELV  420
DKLLQKIRHI RYRDFEAEVN TTMTRSAQIP NLTLIGEQAE ALYTRAGYEY RFKQLLHEPS  480
YVVNESYEDG EDIIKYLVNR HIHPNAPANV EYNREKDAYN CTCKLFERVG FLCRHILAVL  540
KHTHVKALPK SCILHRWTRE AKSSSIDFGT NPTTSCRLGF GLRLKELEEY SRDLFMWGCE  600
SVQHCTMVKA HIAAFDKGEP EEVAQGFDET PVPENPLGFE EEPVASTPRQ SFPPDNIVDP  660
QRDLGRRGGP RKAKRKMFHQ RTSTSPVHNM NETGETTTRV FADVPPEVTS SRKSPTCSFC  720
NEVGHRCNAC PRRRKHQSTD SPIAGVVVTD MGDAYLHTQP NGDVFWSLDT DEETMVLSFQ  780
LVIKKYLRLM YS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1730734PRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EJ870.0A0A2G5EJ87_AQUCA; Uncharacterized protein
STRINGAquca_007_00263.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-80FAR1-related sequence 5