PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G238600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18978.1 Da    PI: 10.2182
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G238600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.97.3e-101052244
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                       +ien++ r  ++ kR +g  K  +EL +LC++ ++ i ++++ 
  Aqcoe4G238600.1.p 10 FIENNTIRRASYRKRMKGFKKMLSELTTLCGVMACAITYGPNA 52
                       8*****************88889*****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-7160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-17182IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.937161IPR002100Transcription factor, MADS-box
CDDcd001203.79E-14359No hitNo description
PfamPF003191.4E-101052IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MVRGKVKHQF IENNTIRRAS YRKRMKGFKK MLSELTTLCG VMACAITYGP NAQAPEIWPN  60
EDEARKALTR FQNCSPEEKA RNVLTHEVIV KKRIEELKKQ LQKQIEENRR IELTNLMYKF  120
MKEGPDALRG ISYQDSIDFE AFLDERRLLI QKKMEILKNS N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5E4G91e-116A0A2G5E4G9_AQUCA; Uncharacterized protein
STRINGAquca_012_00123.11e-116(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.15e-26M-type_MADS family protein