PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe4G246200.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bHLH

Protein Properties

Length: 234aa MW: 26318.2 Da PI: 8.6103

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe4G246200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.8	1.1e-09	58	104	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er RR+++ ++f L +++P + kK++K+++L ++Y+ +Lq Aqcoe4G246200.1.p 58 DHVIAERMRREKLSQRFIDLATIVPGL-----KKMDKSSVLGDCINYLIQLQ 104 6999*********************.....9***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.44	54	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-13	58	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-14	58	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.45E-9	59	108	No hit	No description
Pfam	PF00010	3.1E-7	59	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-10	60	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	9.16E-5	156	228	No hit	No description
Gene3D	G3DSA:3.30.70.260	3.3E-5	158	221	No hit	No description
CDD	cd02116	0.00477	164	220	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MLTPENSFSP NMVSFGSPNS PNYYQHFYGG AVDALKPCQV NKRSCRPHPK TPASSPQDHV 60 IAERMRREKL SQRFIDLATI VPGLKKMDKS SVLGDCINYL IQLQKRVKTL EEQPSTKAFV 120 KKFQIISAGS DDSSSMDTDN FINGGSEEPL LEIEARNSDR NVLIRIHCEN RKGLLLKALM 180 EIEKLNLSVV NLNSVPFGTS TLDITVKAEV IFYIDVKSHD GNIWMKNIEK FQW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009411335.1	5e-59	PREDICTED: transcription factor bHLH18-like isoform X2
Refseq	XP_018684176.1	5e-59	PREDICTED: transcription factor bHLH18-like isoform X2
TrEMBL	A0A2G5E4Z9	1e-153	A0A2G5E4Z9_AQUCA; Uncharacterized protein
STRING	Aquca_012_00203.1	1e-154	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	6e-39	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aqcoe4G246200.1.p