PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe4G246200.3.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bHLH

Protein Properties

Length: 221aa MW: 24983.8 Da PI: 9.529

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe4G246200.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30	9.6e-10	45	91	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er RR+++ ++f L +++P + kK++K+++L ++Y+ +Lq Aqcoe4G246200.3.p 45 DHVIAERMRREKLSQRFIDLATIVPGL-----KKMDKSSVLGDCINYLIQLQ 91 6999*********************.....9***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.44	41	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-13	45	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-14	45	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-7	46	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.50E-9	46	95	No hit	No description
SMART	SM00353	3.3E-10	47	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	7.63E-5	143	215	No hit	No description
Gene3D	G3DSA:3.30.70.260	2.9E-5	145	208	No hit	No description
CDD	cd02116	0.00513	151	207	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MASWSNAKWT PISVMTSPGN CWHQNKVNKR SCRPHPKTPA SSPQDHVIAE RMRREKLSQR 60 FIDLATIVPG LKKMDKSSVL GDCINYLIQL QKRVKTLEEQ PSTKAFVKKF QIISAGSDDS 120 SSMDTDNFIN GGSEEPLLEI EARNSDRNVL IRIHCENRKG LLLKALMEIE KLNLSVVNLN 180 SVPFGTSTLD ITVKAEVIFY IDVKSHDGNI WMKNIEKFQW *

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028126694.1	1e-57	transcription factor bHLH25-like
Swissprot	Q9T072	3e-36	BH025_ARATH; Transcription factor bHLH25
TrEMBL	A0A2G5E4Z9	1e-119	A0A2G5E4Z9_AQUCA; Uncharacterized protein
STRING	Aquca_012_00203.1	1e-120	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-38	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aqcoe4G246200.3.p