PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe4G246400.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

G2-like

Protein Properties

Length: 259aa MW: 28973.5 Da PI: 8.6008

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe4G246400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95	6e-30	100	154	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++L erFve+v+ LGG++kAtPk il+lm+ +gLt+ hvkSHLQkYR+ Aqcoe4G246400.1.p 100 KTRIRWTQDLRERFVECVNCLGGADKATPKGILKLMDSEGLTIFHVKSHLQKYRM 154 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.4E-16	98	154	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.3E-28	98	155	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.4E-22	100	155	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-5	104	153	IPR001005	SANT/Myb domain
Pfam	PF14379	6.5E-16	185	230	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
SNQNPKPSEN SYHTCTSLLG SEQSSPWDNK LVTDNTALNQ KYSSNPSDNT RVASNPFASE 60 LDPPSFRLIP DNKQSSQTSS DVISYTSASP VSSRAAVSNK TRIRWTQDLR ERFVECVNCL 120 GGADKATPKG ILKLMDSEGL TIFHVKSHLQ KYRMAKYIPE SAEGKSDKKV PTSDTIKLDP 180 KTGLQIEEAL RQQLKLQMYL HEQLKIQRNL QVRIEEQGKQ LKKMFDQQAK NSDLMCPDVQ 240 STHHEVARLE ASSADIHL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-23	100	157	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-23	100	157	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-23	100	157	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-23	100	157	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-23	100	157	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-23	100	157	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-23	100	157	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-23	100	157	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007028967.2	1e-74	PREDICTED: myb family transcription factor PHL5
Swissprot	Q0WVU3	9e-64	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A2G5E4S8	1e-160	A0A2G5E4S8_AQUCA; Uncharacterized protein
STRING	Aquca_012_00204.1	1e-161	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	1e-65	G2-like family protein

Link Out ? help Back to Top
Phytozome	Aqcoe4G246400.1.p