PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G253100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 449aa    MW: 50323.5 Da    PI: 6.1111
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G253100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2861.1e-87444412373
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvse.lykalppsetseknsseelaalkl..fsevsPi 90 
                        ++lLl+cA a++s+d +laq++++ l++ as++gdp+qRl++ f++AL +r +  ++  +     + +t +++s++  ++++l  +++++P+
  Aqcoe4G253100.1.p  44 EKLLLHCASALESKDITLAQQVMWVLNNVASSQGDPNQRLTSWFLRALISRASMVCPPqTIYVHDTPNTLQSTSTRPKSVTELaeYVDLTPW 135
                        689************************************************9996553133333333333344555555555567******* PP

               GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefn 179
                        ++f++ + N+aIl+a+eg ++vHi+Df+i++G+QWp+++++La+Rp+g+p lRiT+ +   ++      +++e+g  La+fA + +vpfef+
  Aqcoe4G253100.1.p 136 HRFGFCASNSAILRAIEGYQKVHILDFSITHGMQWPTFIDTLAKRPQGSPILRITVPACRPPVppfLGVSTQEVGLCLANFALSRNVPFEFH 227
                        *******************************************************76654444558999*********************** PP

               GRAS 180 vl..................vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhn 249
                        v+                   +  l++l+   L++k +Eal+Vn++  l +l+de+   ++     rd++L++++sl+P +vvvv+++ad++
  Aqcoe4G253100.1.p 228 VIhgssssmhhdhiltpafqPELLLNQLNATLLNIKDDEALVVNCQNWLRYLPDEPEGHDQytisFRDRLLEIIRSLNPCIVVVVDEDADLT 319
                        **88888776666655544222245666888889*******************99988777666689************************* PP

               GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                        ++s+  r++ +++y +  fd+le+ lp+es++r+ +E+  +g +i+n+++ eg  r+er et  k  +r+++  F++v++ e++ k++k ll
  Aqcoe4G253100.1.p 320 TPSLSSRITTSFNYLWIPFDALETFLPKESSQRTEYEAD-IGHKIENIISYEGLPRIERLETGVKLIQRMNKTQFTSVTFCEDTIKEVKFLL 410
                        ***************************************.**************************************************** PP

               GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                         +++  g+ ++ e++ lvl+Wk+++ v+++aW
  Aqcoe4G253100.1.p 411 DEHA-SGWGMKREDDMLVLTWKGHNSVFATAW 441
                        ****.8899*********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.85717423IPR005202Transcription factor GRAS
PfamPF035143.6E-8544441IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MKSGLRGTTK PLSLPNPILF NNHPSSLRGA LQGCLGSLDG ACIEKLLLHC ASALESKDIT  60
LAQQVMWVLN NVASSQGDPN QRLTSWFLRA LISRASMVCP PQTIYVHDTP NTLQSTSTRP  120
KSVTELAEYV DLTPWHRFGF CASNSAILRA IEGYQKVHIL DFSITHGMQW PTFIDTLAKR  180
PQGSPILRIT VPACRPPVPP FLGVSTQEVG LCLANFALSR NVPFEFHVIH GSSSSMHHDH  240
ILTPAFQPEL LLNQLNATLL NIKDDEALVV NCQNWLRYLP DEPEGHDQYT ISFRDRLLEI  300
IRSLNPCIVV VVDEDADLTT PSLSSRITTS FNYLWIPFDA LETFLPKESS QRTEYEADIG  360
HKIENIISYE GLPRIERLET GVKLIQRMNK TQFTSVTFCE DTIKEVKFLL DEHASGWGMK  420
REDDMLVLTW KGHNSVFATA WVPNGFED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-493744327420Protein SHORT-ROOT
5b3h_E1e-493744327420Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021674577.10.0scarecrow-like protein 32
TrEMBLA0A2G5E5630.0A0A2G5E563_AQUCA; Uncharacterized protein
STRINGAquca_012_00254.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-124GRAS family protein