PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G258900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25786.3 Da    PI: 9.8177
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G258900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.92e-262575151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krien++nrqvt+skRr g+ KKA+EL vLCda+v++i+fs +g+l e+ s
  Aqcoe4G258900.1.p 25 KRIENTTNRQVTYSKRRSGLVKKAKELTVLCDAQVSLIMFSGSGNLSEFTS 75
                       79**********************************************975 PP
2K-box72.11.6e-2487185198
              K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllG.edLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                        yq+ +g + +++++e++q++++k  + +  L++++  ++G e+L+++s++eL +Leq+L++s++ +R++K++ + +q+e+++kk ++lqe+n
  Aqcoe4G258900.1.p  87 YQQVTGIDIWNSHYEKMQEKMKKQLEINTRLRKQIGERIGvESLDDMSFNELCSLEQDLDESVNAVRERKYHKIATQTETSKKKVRNLQETN 178
                        78899999********************************999************************************************* PP

              K-box  92 kaLrkkl 98 
                        ++L ++l
  Aqcoe4G258900.1.p 179 TYLVHEL 185
                        ***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-371776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.0761777IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-3518109IPR002100Transcription factor, MADS-box
CDDcd002654.82E-341896No hitNo description
PRINTSPR004043.0E-271939IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003192.8E-222673IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-273954IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-275475IPR002100Transcription factor, MADS-box
PfamPF014861.4E-1598185IPR002487Transcription factor, K-box
PROSITE profilePS5129713.969100191IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MFILEKFIVK KKKRREMGRG KIEIKRIENT TNRQVTYSKR RSGLVKKAKE LTVLCDAQVS  60
LIMFSGSGNL SEFTSHSTTT KQVYNQYQQV TGIDIWNSHY EKMQEKMKKQ LEINTRLRKQ  120
IGERIGVESL DDMSFNELCS LEQDLDESVN AVRERKYHKI ATQTETSKKK VRNLQETNTY  180
LVHELRARGE VPYYEDEDTV TGMSSRGAHH GEGHGCYNLR LG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-151775159MEF2 CHIMERA
6byy_B2e-151775159MEF2 CHIMERA
6byy_C2e-151775159MEF2 CHIMERA
6byy_D2e-151775159MEF2 CHIMERA
6bz1_A2e-151775159MEF2 CHIMERA
6bz1_B2e-151775159MEF2 CHIMERA
6bz1_C2e-151775159MEF2 CHIMERA
6bz1_D2e-151775159MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1914KKKKRR
21014KKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6947980.0HQ694798.1 Aquilegia coerulea APETALA3-like protein (AP3-3b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263856.16e-82PREDICTED: floral homeotic protein DEFICIENS isoform X1
SwissprotQ003J22e-73TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLF6KYM01e-149F6KYM0_AQUCA; APETALA3-like protein
STRINGAquca_007_00336.11e-100(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-55MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]