PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe4G267800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 536aa MW: 62191.4 Da PI: 9.4304

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe4G267800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.8	5.5e-21	11	98	1	91
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Yn+YA++vGFsvrk+++++s + +i ++t++Cs+eg+ ++ ++ ++r+e r gCka++ v+++k+g++ev k+ +H+Hel p Aqcoe4G267800.1.p 11 NYYNNYARMVGFSVRKQRTNRStVDRSKILRYTLCCSCEGSYTKVHTP----IKKREERRFGCKAQFDVNLNKNGNYEVVKFIGDHTHELLP 98 69**************99995455679********9998777....9999*******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-18	11	98	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-18	172	237	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.52	399	437	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-8	412	439	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	3.0E-6	413	433	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
MKFNTIEEAY NYYNNYARMV GFSVRKQRTN RSTVDRSKIL RYTLCCSCEG SYTKVHTPIK 60 KREERRFGCK AQFDVNLNKN GNYEVVKFIG DHTHELLPLT RAHLLRSQRS VKPSQAGVVQ 120 KMYSAGIQRS KIHTYFCEEA GGAEHVGFTK KDCSNLIQRT RAEILKKGDA RCLLEYFEVE 180 RENTDAFVWL FTTFLEAMGG KKPITIFSDQ ALAIAKAINI VFPESDHRLC LWHIYQNALK 240 NIGTVFSKFK SFSAKFKDCI HEGETIEEFE ETWLALLKEF KLEDNEWLEN LYKLREQWAQ 300 VYARAHFCAG ITTTQRSESI NKYLKMFFNS NIILREFAKL YAKAMDARRE KEREEDKTTR 360 TTAPSLLSDW LVEREASKVL KVDGDVSTFV VEKLGSRRKD RTLTYNQSKQ SVKCTCRMFE 420 FQGILCCHAL KLFRDMNFSS LPSCYYLKRW TKNIVDEVVF DSYGEAIRRD MDPFATTRYS 480 ELSYVSQRVV AKGATSNKLS SLAKSEMLQL EAKLDALAIQ EEKLEQKGKR KKICQ*

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

MKFNTIEEAY NYYNNYARMV GFSVRKQRTN RSTVDRSKIL RYTLCCSCEG SYTKVHTPIK  60
KREERRFGCK AQFDVNLNKN GNYEVVKFIG DHTHELLPLT RAHLLRSQRS VKPSQAGVVQ  120
KMYSAGIQRS KIHTYFCEEA GGAEHVGFTK KDCSNLIQRT RAEILKKGDA RCLLEYFEVE  180
RENTDAFVWL FTTFLEAMGG KKPITIFSDQ ALAIAKAINI VFPESDHRLC LWHIYQNALK  240
NIGTVFSKFK SFSAKFKDCI HEGETIEEFE ETWLALLKEF KLEDNEWLEN LYKLREQWAQ  300
VYARAHFCAG ITTTQRSESI NKYLKMFFNS NIILREFAKL YAKAMDARRE KEREEDKTTR  360
TTAPSLLSDW LVEREASKVL KVDGDVSTFV VEKLGSRRKD RTLTYNQSKQ SVKCTCRMFE  420
FQGILCCHAL KLFRDMNFSS LPSCYYLKRW TKNIVDEVVF DSYGEAIRRD MDPFATTRYS  480
ELSYVSQRVV AKGATSNKLS SLAKSEMLQL EAKLDALAIQ EEKLEQKGKR KKICQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-52	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe4G267800.1.p