PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G284500.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB
Protein Properties Length: 364aa    MW: 40197.7 Da    PI: 4.5017
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G284500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.7e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEde+l +++++ G g+W++ ++  g++R++k+c++rw +yl
  Aqcoe4G284500.3.p 14 KGLWSAEEDEILRNYIEENGEGSWRSLPKNAGLNRCGKSCRLRWVNYL 61
                       678*******************************************97 PP
2Myb_DNA-binding56.85.3e-1867112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+ T eE++++++ +++ G++ W+ Iar+++ gRt++++k++w++yl
  Aqcoe4G284500.3.p  67 RGNITSEEEDIIIKMHNKIGNR-WSVIARHLP-GRTDNEIKNHWNSYL 112
                        7999******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-20564IPR009057Homeodomain-like
PROSITE profilePS5129416.86961IPR017930Myb domain
SuperFamilySSF466891.25E-2911108IPR009057Homeodomain-like
SMARTSM007173.9E-121363IPR001005SANT/Myb domain
PfamPF002491.0E-141461IPR001005SANT/Myb domain
CDDcd001676.06E-101761No hitNo description
PROSITE profilePS5129422.162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2365116IPR009057Homeodomain-like
SMARTSM007179.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.4E-1567112IPR001005SANT/Myb domain
CDDcd001677.38E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGRAPCCEKV GLNKGLWSAE EDEILRNYIE ENGEGSWRSL PKNAGLNRCG KSCRLRWVNY  60
LRGGLMRGNI TSEEEDIIIK MHNKIGNRWS VIARHLPGRT DNEIKNHWNS YLSRRIYTIR  120
RPVGESSPRT VIDTVKLDGG CKRKGQPRCR VSRKKNNHQE IPSNAEKGGL IPSMTLNKDD  180
KESQNAGIIL NLSEEIETMS WSSSVVNGEP ENEIMGPYQG LESCVLFTDD IMDEDLLNPS  240
DILSLNEKDN EGQLGVLLGS SSNNNGDEGE SSGGVSLSSN STAADPAEST DEWYVPFCSI  300
AHPGEREGVV EAPDNNILIT DKLGDDQLLS WLWDINDSST KEGDLFLDCD EEQIKAIAGS  360
LLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFlavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Triggered by HY5 in response to light and UV-B. {ECO:0000269|PubMed:19895401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022728031.11e-71transcription factor MYB4-like
SwissprotQ9FJ072e-62MY111_ARATH; Transcription factor MYB111
TrEMBLA0A2G5D4100.0A0A2G5D410_AQUCA; Uncharacterized protein
STRINGAquca_028_00141.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-64myb domain protein 111
Publications ? help Back to Top
  1. Pandey A,Misra P,Bhambhani S,Bhatia C,Trivedi PK
    Expression of Arabidopsis MYB transcription factor, AtMYB111, in tobacco requires light to modulate flavonol content.
    Sci Rep, 2014. 4: p. 5018
    [PMID:24846090]
  2. Lotkowska ME, et al.
    The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.
    Plant Physiol., 2015. 169(3): p. 1862-80
    [PMID:26378103]
  3. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  4. Zhou Z,Schenke D,Miao Y,Cai D
    Investigation of the crosstalk between the flg22 and the UV-B-induced flavonol pathway in Arabidopsis thaliana seedlings.
    Plant Cell Environ., 2017. 40(3): p. 453-458
    [PMID:28032363]
  5. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  6. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]