PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G284600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 295aa    MW: 32916.7 Da    PI: 4.9807
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G284600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-152469148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+ T eE++++++  +++G++ W+ Ia  ++ gRt++++k++w++yl
  Aqcoe4G284600.1.p 24 RGNITSEEEDIIIKMYNKFGSR-WSIIAGQLP-GRTDNEIKNHWNSYL 69
                       7999******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.437118IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.5E-9431IPR009057Homeodomain-like
SuperFamilySSF466894.94E-21474IPR009057Homeodomain-like
PROSITE profilePS5129420.781973IPR017930Myb domain
SMARTSM007172.7E-132371IPR001005SANT/Myb domain
PfamPF002491.5E-132469IPR001005SANT/Myb domain
CDDcd001675.67E-102869No hitNo description
Gene3DG3DSA:1.10.10.601.4E-193269IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGLKRCGKSC RLRWVNYLKG DLMRGNITSE EEDIIIKMYN KFGSRWSIIA GQLPGRTDNE  60
IKNHWNSYLS RRIYTIRKPL GGSSPTTVID IVKMGGMYCK RKSRTSSRTA RKKNDPQEIP  120
LNAKNAVFVQ KSIDGLIPST PLQKEIETIS WSSPLVNGEP ENEVFGPYQG VESCMFADDI  180
MGDWLLGPSY NLSLNDNDNE VITLNDGQLG LLGSSSNNNG KRATSDEEEE SGSGITSILL  240
NGAAKNTDEW YDPSCSIASW DRDGVVDDRN HKLRTDDEGD ELLSWLWDNH DSGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A3e-1757535105MYB3
3zqc_D3e-1757535105MYB3
3zqc_G3e-1757535105MYB3
3zqc_J3e-1757535105MYB3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199112KRKSRTSSRTARKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5D4101e-104A0A2G5D410_AQUCA; Uncharacterized protein
STRINGAquca_028_00141.11e-105(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.12e-35myb domain protein 12