PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G296700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 444aa    MW: 47833.4 Da    PI: 7.893
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G296700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.6e-124975127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       ++++ C +++rtG C yG++C+F+H+p
  Aqcoe4G296700.1.p 49 PGEPDCIYYLRTGLCGYGSNCRFNHPP 75
                       5789*********************97 PP
2zf-CCCH35.81.3e-1193117327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        ++ C+ff++tGtC++G++Ck++H++
  Aqcoe4G296700.1.p  93 QPDCQFFLKTGTCRFGSTCKYNHPR 117
                        789********************96 PP
3zf-CCCH30.46.7e-10138162327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C++++r+  Ck+G  CkF+H++
  Aqcoe4G296700.1.p 138 EKPCPYYMRNWSCKFGVACKFHHPQ 162
                        689******99************97 PP
4zf-CCCH37.15.2e-12286311227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C++++++G Ck+G++Ck++H++
  Aqcoe4G296700.1.p 286 DQPECQYYMKNGSCKFGSTCKYHHPK 311
                        689*********************96 PP
5zf-CCCH35.91.2e-11331356126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ++++ C f++ +G+Ck+G++CkF H+
  Aqcoe4G296700.1.p 331 PGEAVCTFYSMYGICKFGSTCKFDHP 356
                        57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.9E-64875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8174876IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-95075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-65375IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-45473IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.94890118IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-590117IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-993117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-695118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-596118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5134162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249135163IPR000571Zinc finger, CCCH-type
SMARTSM003560.0045137162IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7138162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.07284312IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5284311IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9286311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6287313IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4290311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5329356IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.986330358IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6330357IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8332356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MPENRQVQSN GSDNLEDTMW RLKIQNQDVP DGGGGGGGAG NSSPYPDRPG EPDCIYYLRT  60
GLCGYGSNCR FNHPPYSGQV AQYRGELPER AGQPDCQFFL KTGTCRFGST CKYNHPRERQ  120
IAGQVPLNIL GLPMRQEEKP CPYYMRNWSC KFGVACKFHH PQPLGAVVPA SGPAAYGSTS  180
SSVAPPSGLP YGGGLPAWSL PRAPYISGAR MQGSQAYMPV VISSSQGIMQ APQGWNTYTG  240
AMSQVSSSSG LGSNLVYNSK NQGELGSSRQ VPLLPTSVPL FPERPDQPEC QYYMKNGSCK  300
FGSTCKYHHP KERIAPLAAG TLGPYGLPLR PGEAVCTFYS MYGICKFGST CKFDHPLAGY  360
YNYGVGVNVP TLTMPETAAY PYQRNSTLSH SSETSPSKSS RLPDQIRNPE ATSPQNQNLD  420
VVDSEDNSPP QASPTSLEAS QAD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270053.10.0PREDICTED: zinc finger CCCH domain-containing protein 12 isoform X1
SwissprotQ5JLB51e-110C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A2G5D3M00.0A0A2G5D3M0_AQUCA; Uncharacterized protein
STRINGAquca_028_00039.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.24e-95C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]