PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G310600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NF-YB
Protein Properties Length: 225aa    MW: 25434.7 Da    PI: 6.9538
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G310600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB167.12.2e-5250146197
              NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                        vreqdr++Pianv+rim+++lP +aki++daket+qecvse+isf+tsea+d+cq+e+rkti+++d+lwa+++lGf++y++pl++++++yre
  Aqcoe4G310600.1.p  50 VREQDRYMPIANVIRIMRRILPPHAKIADDAKETIQECVSEYISFITSEANDRCQKEQRKTITAEDVLWAMGKLGFDEYIAPLTLFMQRYRE 141
                        69****************************************************************************************** PP

              NF-YB  93 legek 97 
                        +e+e+
  Aqcoe4G310600.1.p 142 FENER 146
                        **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.8E-5046150IPR009072Histone-fold
SuperFamilySSF471131.37E-3653148IPR009072Histone-fold
PfamPF008081.1E-2556120IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.8E-1584102No hitNo description
PROSITE patternPS00685087103IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.8E-15103121No hitNo description
PRINTSPR006151.8E-15122140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEGSRGGGFN GLFPPPKPPT VPKSVKVQQL LENHSSTGED NGHHDSYCIV REQDRYMPIA  60
NVIRIMRRIL PPHAKIADDA KETIQECVSE YISFITSEAN DRCQKEQRKT ITAEDVLWAM  120
GKLGFDEYIA PLTLFMQRYR EFENERSRSD QLVKRTVEMQ PMGAVGFAAP PFQISPHQGV  180
LAPPIGPGPY FKQEHGGNMN QLQNQNQQGQ GHNMSYFDPY AHYR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A8e-5646141297NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019052731.11e-73PREDICTED: nuclear transcription factor Y subunit B-1-like
TrEMBLA0A2G5C4461e-168A0A2G5C446_AQUCA; Uncharacterized protein
STRINGAquca_110_00016.11e-169(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.22e-59nuclear factor Y, subunit B6