PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe4G310800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NF-YB

Protein Properties

Length: 198aa MW: 19587.2 Da PI: 6.5182

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe4G310800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	77.8	1.6e-24	34	77	2	45
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisf 45 +eqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf Aqcoe4G310800.1.p 34 KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISF 77 79*****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.7E-22	28	77	IPR009072	Histone-fold
SuperFamily	SSF47113	3.77E-19	36	102	IPR009072	Histone-fold
Pfam	PF00808	3.7E-14	39	77	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.3E-4	78	102	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MADSDNESGG HGGNSNNLGG GGGGGGNNSE FSPKEQDRFL PIANVSRIMK KALPANAKIS 60 KDAKETVQEC VSEFISFEEY VEPLKIYLQK FREMEGEKTT SGGGGGGGKD GGGSGGGGGN 120 GNNVNSGNSM GGYNNSGGTS MYGGGGSMML GQQQHYQGQM YGSGSFHHMV GSSGGGIIKG 180 SLESPRSGGG GGGGGGR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	7e-24	29	93	2	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	113	SGGGGGGGKDGGGS
2	106	112	GGKDGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003634760.1	5e-54	PREDICTED: nuclear transcription factor Y subunit B-3
Refseq	XP_026392924.1	8e-54	nuclear transcription factor Y subunit B-3-like
Swissprot	O23310	4e-42	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A438ERG5	2e-51	A0A438ERG5_VITVI; Nuclear transcription factor Y subunit B-3
TrEMBL	D7UAG5	1e-52	D7UAG5_VITVI; Uncharacterized protein
STRING	VIT_19s0015g00440.t01	2e-53	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	7e-36	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Aqcoe4G310800.1.p

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]