PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G311000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 721aa    MW: 83812.8 Da    PI: 6.3381
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G311000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.29.9e-2764161288
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...........tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                        fYneYA+ vGFs+r++k+++s+ +ge   ++f+Cskeg+r++++++            + +rr+ ++ r+gC akl vk++++g+w+++k++
  Aqcoe4G311000.1.p  64 FYNEYARLVGFSIRRAKNRRSNIDGELLFQRFCCSKEGHRRKRREDddgtkvkdgvvVKVRRRNVKSIRVGCSAKLDVKRSTSGRWVIQKFD 155
                        9*****************************************99999********99888999999************************** PP

               FAR1  83 leHnHe 88 
                        +eHnH+
  Aqcoe4G311000.1.p 156 EEHNHD 161
                        *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-2364162IPR004330FAR1 DNA binding domain
PfamPF105517.5E-26268350IPR018289MULE transposase domain
PROSITE profilePS5096610.014537575IPR007527Zinc finger, SWIM-type
PfamPF044343.1E-5549572IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MDITSHFDSL GTNDAAFVDI PECGDTLAAD GFPSSNDLSV FNDKTFLKPS VGMEFDSLEK  60
AYLFYNEYAR LVGFSIRRAK NRRSNIDGEL LFQRFCCSKE GHRRKRREDD DGTKVKDGVV  120
VKVRRRNVKS IRVGCSAKLD VKRSTSGRWV IQKFDEEHNH DYANQGEKHL LRSQRRLQGD  180
STDIRSKQGV HYFCGEGGSG ERKKFERGDV KIVLDYLTQM QMDPSFFYAV EVSNTDQMLN  240
FFWADARSRM DYGYFGDVVY FSTSYGSMYG RPFAPIFGVN HHLQTVLFGC VILLNETEDS  300
FAWLLETFLK AMSDHRPRVI ITDQDEPMEK AIEQVLPGTQ HRLCLWHIFQ DAARHLNELY  360
NSHEEFITEF RKCIYEPQSS EEFELRWPLL LDRYGISNNE WLDDMFKKRN KWVPVYSRHI  420
FQADMMTTER IEIMNSFFEG YMNESLSLNE VLKQFGEALA CRREEEIKED IQSEQTRPVL  480
KLGVPMELQA ADVYTGSLFK KFHYEFCESF NYIAEETGRV GMDWTYAVSR WGQNRSRLVN  540
LNSYDNNIRA FCDCQNYEFM GILCRHIFKV FTVRNIMLIP DKYFLRRWTK KAKVGVVLCH  600
SSKEQADHQN SLALRYNDLS HLSINYCAKA SVSTDAYLTA KHEMEIILRE LEKVAEEDMT  660
ITHPDIEDIR SSHFPVEVNN LGTSNLLMCE DNQTFPSATH VPMPNPPGIS DKRTGFWLRL  720
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026448588.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_026448589.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_026448591.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1U8AHV80.0A0A1U8AHV8_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X4
TrEMBLA0A1U8AJ550.0A0A1U8AJ55_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_010267250.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-139FAR1-related sequence 5