PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G312500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 724aa    MW: 83188.5 Da    PI: 6.826
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G312500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.56e-2084175190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 
                        ++Y ++Ak+ GF +r+++sk+s r g i++r++vC++ g ++++k +t +++++r++t +gC+ak+++ ke      +w v+k+ ++HnHel
  Aqcoe4G312500.1.p  84 QYYANFAKNNGFAIRRESSKSSPRLG-IYRRELVCYRAGVARHRKFATPERQKNRKSTLCGCQAKITIVKEFlgtVTQWTVKKFCNDHNHEL 174
                        69********************9999.********************99999******************99888899*************9 PP

               FAR1  90 a 90 
                         
  Aqcoe4G312500.1.p 175 L 175
                        6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.5E-1884175IPR004330FAR1 DNA binding domain
PfamPF105512.4E-19298390IPR018289MULE transposase domain
PROSITE profilePS509669.52570606IPR007527Zinc finger, SWIM-type
PfamPF044343.2E-7577603IPR007527Zinc finger, SWIM-type
SMARTSM005754.7E-6581608IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MKNKLANNGG KCWVRRQECP CGELKCYIQY KGGNGEEEEE ENLVKNDERV EEDDEGAEVS  60
SSSSTSQGPP FVGQTFYSDD DAFQYYANFA KNNGFAIRRE SSKSSPRLGI YRRELVCYRA  120
GVARHRKFAT PERQKNRKST LCGCQAKITI VKEFLGTVTQ WTVKKFCNDH NHELLKDDQL  180
RLLPAYRKIP EVDRQRILLL RRAGYSTSHI MKILGSEKGG DSEKLPFLDR DVRNFIQSSS  240
KKIDRGQDAT ELLNLCKHMK ERSVNFVYEY TLDGDGQLEN LAWTYRHSVH AYEVFGDVVV  300
FDVAFREITY DRLLGVWFGI DNHGKIIFFC AALLQNGTSH SFAWALQTFL LLMKGKSPHT  360
ILTDLDWRLR DAIVSEFPHT KHAFCMWHVF SKLSSWFHFP LGSRYEEFKC EFTRLYNSDT  420
VKDFECQWNQ MISRFGIGLN KHIVLLTAYR ASWALPYVKG CFHAGMRGFE CSKLIDEFLK  480
EILSVQTHSE NIFEKVGNIC SFRSQGGEED MEDVCMKTST PMEEHASSIL TPYAFSLLQQ  540
EITMSMQYAA FEMPDGLYLV RHHKQMDGGH LVSWTPRDER IQCSCKEFEF TGILCRHTLR  600
VLGLKNYFHI PEKYLLIRWR QESSLLHKIT QSDSGDWPLA FHSLTASLFS ESMISEERIN  660
YVQTELTKVL KHVKNMQGSD GLLPLAPPID VVEDETGVEN AVISSECDSI GNTCQSDTYV  720
SQR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026406897.10.0putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A2G5C2X00.0A0A2G5C2X0_AQUCA; Uncharacterized protein
TrEMBLA0A2G5C2Z30.0A0A2G5C2Z3_AQUCA; Uncharacterized protein
STRINGAquca_110_00033.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10