PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G001300.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 238aa    MW: 27043 Da    PI: 6.3412
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G001300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.11.7e-2478163190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        ++Yn+YAk++GFs+r+sk+  + ++++it+r f+Cskeg+r ++ +   +  ++r+ trtgCka+l ++++  gk+ v+++ ++HnH+la
  Aqcoe5G001300.3.p  78 DYYNAYAKSAGFSIRRSKMVMR-KDKTITRRVFCCSKEGFRCKHPRG--DPMKPRPLTRTGCKARLGIHLQ-AGKYIVNEFLQQHNHPLA 163
                        69***************99887.7777***************99988..999*******************.9***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.7E-2178163IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDDQINSSQL HPNQITQHSC HQIDSEGDDD DDDHNTLHLD SQTDVNPAVS SESQPSNIFN  60
GDEPTLGMLF QSETQAYDYY NAYAKSAGFS IRRSKMVMRK DKTITRRVFC CSKEGFRCKH  120
PRGDPMKPRP LTRTGCKARL GIHLQAGKYI VNEFLQQHNH PLARPSEAHM LRSQRKNQDP  180
QAFNIDDILS YLGEETGAPQ DLNLLEGDSN NYLQRWCYEV LKKAQLGCSQ EKRADLE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026422684.18e-92protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_026422685.18e-92protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2G5C3D81e-170A0A2G5C3D8_AQUCA; Uncharacterized protein
STRINGAquca_108_00046.11e-171(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-25FAR1-related sequence 5