PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G002400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 233aa    MW: 26692.9 Da    PI: 9.0277
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G002400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.16e-10107148351
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                         +GV++  k+ +W A I++      +k+++lg+ g+  eAa ++++a+ 
  Aqcoe5G002400.1.p 107 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQVEAAHLYDRAAF 148
                        79**98..47*********4.....5**********99********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-4106149IPR001471AP2/ERF domain
SMARTSM003807.2E-4106163IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-7106151IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-5109153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVSLRRRRLL GYSTGIISPE VEHHTYGDNG TEKPFQLINP MSVHPVSSVE LNQPKENNLS  60
IVPPVSSNIS GTSSSKEERS QNFSEQAVKR RKRHRRKHFE NQEPCIMRGV YFKNMKWQAA  120
IKVDKKQIHL GTVGSQVEAA HLYDRAAFMC GREPNFELSE EEKQELRQYD WNEFLTMTRY  180
AITNKKHQKR LRAGPTNQHE TPLQNGKSDK EQGTQSVSDL EDVEVEPETS VS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3931483e-42FQ393148.1 Vitis vinifera clone SS0AFA2YG23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242670.13e-90PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2
RefseqXP_019051495.13e-90PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2
RefseqXP_019051496.13e-90PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2
TrEMBLA0A2G5C3921e-162A0A2G5C392_AQUCA; Uncharacterized protein (Fragment)
STRINGAquca_108_00037.11e-163(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.27e-47ERF family protein