PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G006100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 694aa    MW: 77388.9 Da    PI: 5.7347
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G006100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.12.2e-20558654295
                        EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                        +kvl++sdv+++gr+vlpkk ae++  g++ + ++ + +ed  s+r W++++++  ++ks++y+l+ ++ eFv++ngL+egDf+v++  ++ 
  Aqcoe5G006100.1.p 558 QKVLKQSDVGNLGRIVLPKKEAETYlpGLDARDGISIAMEDiGSSRIWNMRYRFwpNNKSRMYLLE-NTGEFVRSNGLQEGDFIVIY--SDt 646
                        79*************************99999*********7788*******99777777777777.********************..444 PP

                        SEE..EEE CS
                 B3  88 sefelvvk 95 
                        ++++++++
  Aqcoe5G006100.1.p 647 KCGKYLIR 654
                        89888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-28552664IPR015300DNA-binding pseudobarrel domain
CDDcd100158.02E-34555656No hitNo description
SuperFamilySSF1019365.1E-22556651IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.842557659IPR003340B3 DNA binding domain
SMARTSM010191.5E-19557659IPR003340B3 DNA binding domain
PfamPF023621.8E-16558653IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MESSDLNPVE GVSLNWEEDL AVELDKEMWF ERDEDEDLNA FINYDDFPPL PDFPCISSSS  60
SSSCSSAPVM PNNNPTKSSS SSSASSSSSS SVTSWIHHNN KDNQQDYAPD QALLSTGSFE  120
IPHEEGGLGR LASDDYMDVM EELGGMDLLD SDDIWDPSTL FPCDGLEDID FDKHQNEENE  180
EAMIIQRTNS SQSDGHQQEK PSEDLAMVFF EWLKSNKESI SAEDLRSIKL KRSTIECAAK  240
RLGGGKEGMK QLLKLILEWV QNHQLQKKRM KEGDNSSSLP SQVVLPTVQQ NPNLNPSSTS  300
SPNPSPVDLN TNSYMVPSMS QWVPHHHHQP YIPNSTTSVF PSMMYGGYMG EPVYNNGVSI  360
PPVSPTSFNN QTSIPQTWPP PTHNYSPSTA HYNVFPDQTA QVVSVPQLQT RAYTPFGNPY  420
PCQLYPTAGG DRLVRLGSSA TKEARKKRMA RQKRFFSHSR SHSHQHQQTN ETRLIANDTN  480
CAITSQSPNP SWLYWPSSPS TTTSPSPSSM LISDPPPQLL PQGDQQTMQS QQFQRQTGLD  540
RRQGFKTGPE KNLKFLLQKV LKQSDVGNLG RIVLPKKEAE TYLPGLDARD GISIAMEDIG  600
SSRIWNMRYR FWPNNKSRMY LLENTGEFVR SNGLQEGDFI VIYSDTKCGK YLIRGVKVRQ  660
PGSKSEVKKQ GKTHRNTLVG TGASSSTKEA GLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-345536601108B3 domain-containing transcription factor FUS3
6j9b_D2e-345536601108B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632555.10.0B3 domain-containing transcription factor ABI3-like
TrEMBLA0A2G5C3400.0A0A2G5C340_AQUCA; Uncharacterized protein
STRINGAquca_108_00003.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-69B3 family protein