PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G020200.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C2H2

Protein Properties

Length: 536aa MW: 59087 Da PI: 6.4636

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G020200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.7	2.3e-06	272	293	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H Aqcoe5G020200.1.p 272 FCLICGKGFKRDANLRMHMRGH 293 5*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.38E-5	269	296	No hit	No description
SMART	SM00355	0.012	271	293	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.552	271	298	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	273	293	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.0E-5	273	322	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	66	320	353	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	19	358	380	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010044	Biological Process	response to aluminum ion
GO:0010447	Biological Process	response to acidic pH
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
MNPAVNLCSD TWAECSVRNK SSSEKFHSQQ HHRKREDASS PDFTPPLSKF CKPSEPTSSH 60 SGNLDNQRII HDIVDGQAKD KSATAKTNEW NPNSILSNLS FVEQKIHQLQ DLVHLMIGQD 120 KRIVNLSDEL VAQQQQLVTA DLTSIIVQLI STAGSLLPSV KSSHLVNPIL GQLQSISGVG 180 CATNLSVNNA SGDDNNIKGE TKLQCHLDQI EQVASWEREH KNAGKPIVSV SNVDEQIPKD 240 EEDAGDADNL PPGSYEVLQL EKEEILAPHT HFCLICGKGF KRDANLRMHM RGHGDEYKTP 300 AALAKPNKEP GTEPMLAKRY SCPYTGCKRN KDHKKFQPLK TFLCVKNHYK RTHCDKSYTC 360 SRCNNKKFSV LADLKTHEKH CGRDKWLCSC GTTFSRKDKL FGHVALFQGH TPALPVEETK 420 GACGTLNGED SIEATNLENT GFNFSSGFSN ESGVQNVIDM KGGIDDPAAF FSTLDFDTCS 480 FGGYEFPRPP FDISESSLSC LLSGSSDYVQ NTGTESGSDA FRIEKWKESS LAEDF*

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

MNPAVNLCSD TWAECSVRNK SSSEKFHSQQ HHRKREDASS PDFTPPLSKF CKPSEPTSSH  60
SGNLDNQRII HDIVDGQAKD KSATAKTNEW NPNSILSNLS FVEQKIHQLQ DLVHLMIGQD  120
KRIVNLSDEL VAQQQQLVTA DLTSIIVQLI STAGSLLPSV KSSHLVNPIL GQLQSISGVG  180
CATNLSVNNA SGDDNNIKGE TKLQCHLDQI EQVASWEREH KNAGKPIVSV SNVDEQIPKD  240
EEDAGDADNL PPGSYEVLQL EKEEILAPHT HFCLICGKGF KRDANLRMHM RGHGDEYKTP  300
AALAKPNKEP GTEPMLAKRY SCPYTGCKRN KDHKKFQPLK TFLCVKNHYK RTHCDKSYTC  360
SRCNNKKFSV LADLKTHEKH CGRDKWLCSC GTTFSRKDKL FGHVALFQGH TPALPVEETK  420
GACGTLNGED SIEATNLENT GFNFSSGFSN ESGVQNVIDM KGGIDDPAAF FSTLDFDTCS  480
FGGYEFPRPP FDISESSLSC LLSGSSDYVQ NTGTESGSDA FRIEKWKESS LAEDF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00196	ampDAP	Transfer from AT1G34370	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010256329.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Refseq	XP_010256330.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Swissprot	Q9C8N5	1e-169	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	A0A2G5DPQ8	0.0	A0A2G5DPQ8_AQUCA; Uncharacterized protein
STRING	Aquca_017_00778.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-164	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe5G020200.1.p

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]