PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G028100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 133aa    MW: 14763.3 Da    PI: 5.3074
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G028100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.82e-212272255
                AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr ++ +g+++AeIrd  + ng  +r++lg+fgtaeeAa+a+++a+  ++g
  Aqcoe5G028100.1.p 22 KYRGVRKRP-WGKYAAEIRDS-NrNG--TRVWLGTFGTAEEAARAYDRAAYTMRG 72
                       8********.**********4.4254..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-352289IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-232281IPR016177DNA-binding domain
PROSITE profilePS5103223.3272280IPR001471AP2/ERF domain
CDDcd000188.53E-202280No hitNo description
PfamPF008476.1E-162272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-322281IPR001471AP2/ERF domain
PRINTSPR003679.0E-122334IPR001471AP2/ERF domain
PRINTSPR003679.0E-124662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MAERRGNKQE QLVIGGDGGE VKYRGVRKRP WGKYAAEIRD SNRNGTRVWL GTFGTAEEAA  60
RAYDRAAYTM RGSLAILNFP SEYNLPYTSA ASSSSSVYGN NVDRNEVIEF EYLDDQVLED  120
LLDSDVKKGK NV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-362211714114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733438.12e-45ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC55e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G5DPA44e-91A0A2G5DPA4_AQUCA; Uncharacterized protein
STRINGAquca_017_00710.17e-92(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-30ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]