PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G028800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 249aa    MW: 29013.5 Da    PI: 8.2731
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G028800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.35.2e-2869156188
               FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                        +fYn+YA +vGFsvrk++++ s + ++e+++rtf+Cs +g+++++ k +++++r+ra trtgCkak+ ++k+ d+ w+vtk+++eHnH+
  Aqcoe5G028800.1.p  69 SFYNRYAAKVGFSVRKDSTSISrTGTREVIDRTFCCSLQGSQDPRCKPKDQRKRNRADTRTGCKAKISLRKK-DELWVVTKFVEEHNHN 156
                        5****************99998455789********************9**********************9.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2469157IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MHYDSFDGQK EIVNQVESVN GLEEREVRNV SNFEMNKSVS INRPEDFFEE DDRCPSIGME  60
FQSQEAAYSF YNRYAAKVGF SVRKDSTSIS RTGTREVIDR TFCCSLQGSQ DPRCKPKDQR  120
KRNRADTRTG CKAKISLRKK DELWVVTKFV EEHNHNHVPP SKRHKLRSLR RMTENLMTRY  180
ESLEDEKSCK IGFTLREATN YLSTKRQSEV RKGDVEEVLY HLECQQLKSP AFFYAIQVDS  240
EGLTTNFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026428671.14e-64protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2G5DP931e-129A0A2G5DP93_AQUCA; Uncharacterized protein
STRINGAquca_017_00705.11e-130(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-28FAR1-related sequence 5