PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G042200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 352aa    MW: 37486.6 Da    PI: 6.6035
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G042200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.2e-10200244554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  Aqcoe5G042200.1.p 200 HSIAERLRRERIAERMKALQELVPSS-----NKTDRAAMLDEIVDYVKFL 244
                        99***********************7.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.72E-11193249No hitNo description
SuperFamilySSF474594.97E-15193254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.221195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-15197255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-7200244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MANNNNPTEG LTDDFLDQIL SYGAHEGNLA GNDVNLAGTT TPGGSMALQL SSSGGDITGS  60
GGYHHHHQHQ HHHQLSGGGG GFPLGLSLEQ SGKGGFFKPD EASGSGKRFR DDFVDLKAVS  120
STNNDNNDRG DSVHLNNLFP AFGHVQQQQQ AHSVRPPSHQ NQINQPFLGH PTPGAVAVVP  180
HPPAIRPRVR ARRGQATDPH SIAERLRRER IAERMKALQE LVPSSNKTDR AAMLDEIVDY  240
VKFLRLQVKV LSMSRLGGAG AVAQLVADIP LSSAEGGASE GGSNQPAWEK WSTDGTEHQV  300
AKLMEEDVGA AMQFLQSKAL CIMPISLASA IYHDQPPDAS TMIKPEPNAP S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3799705e-39FQ379970.1 Vitis vinifera clone SS0ADG1YM18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246319.11e-150PREDICTED: transcription factor UNE12-like isoform X1
RefseqXP_010246320.11e-150PREDICTED: transcription factor UNE12-like isoform X2
RefseqXP_010246322.11e-151PREDICTED: transcription factor UNE12-like isoform X4
RefseqXP_010274208.11e-151PREDICTED: transcription factor UNE12 isoform X1
SwissprotO227688e-95UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2G5DNS30.0A0A2G5DNS3_AQUCA; Uncharacterized protein
STRINGAquca_017_00590.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]