PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G042300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 279aa    MW: 32327.9 Da    PI: 7.8727
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G042300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF412.4e-131150342
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                       i + + r+ tf kR +g+ KK +ELS+LC++++++i +++
  Aqcoe5G042300.1.p 11 IRDPRVRNSTFVKRNKGLKKKVHELSTLCGVDACMISYGP 50
                       667778999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.33E-17190IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.432149IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-10160IPR002100Transcription factor, MADS-box
CDDcd002663.58E-18270No hitNo description
PRINTSPR004048.5E-6323IPR002100Transcription factor, MADS-box
PfamPF003196.6E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRAKLNLQL IRDPRVRNST FVKRNKGLKK KVHELSTLCG VDACMISYGP MHNDRPINPD  60
TWPETPANRH KVLQIIDHYQ QHCKDGLWKR NFSLGDFYKV QKKKVDDEIA KIQNKNNEVE  120
HLVWSHHIND LSVDQLNQLL VTLDSKLERI NCRMEAIKEK QSYTGGLQMP EYTYNPPLNQ  180
IPYSVPNTYH GNGWNNDLAM KMETRPIAYE KPLNYHMIPM DYSTNLPVIC DQDSMMNTMM  240
SLNGYNGDRI NMVPMDNLLY PESNPPCSDN GVLYSNEKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DPI50.0A0A2G5DPI5_AQUCA; Uncharacterized protein
STRINGAquca_017_00589.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.15e-17AGAMOUS-like 92