PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G043500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 320aa    MW: 36410.7 Da    PI: 5.055
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G043500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.73e-131354344
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                       i ++s r+ tf +R ng+ KK +ELS+LC++++++i +++ +
  Aqcoe5G043500.1.p 13 IREDSVRKATFKRRYNGLKKKIHELSTLCGVDACMITYGPMQ 54
                       778999*********************************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-6166IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.045351IPR002100Transcription factor, MADS-box
CDDcd002666.12E-18491No hitNo description
SuperFamilySSF554551.15E-17693IPR002100Transcription factor, MADS-box
PfamPF003191.2E-131352IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVRGCGKLKL QLIREDSVRK ATFKRRYNGL KKKIHELSTL CGVDACMITY GPMQCDGTMK  60
LDTWPPNQEQ VQQVINRYQQ LDGTTKKKKN NVCLTDFMKG QNKKIEEDFS KLCEKNNENW  120
INCLSKDQLI EISATLDSKI QTIDDKIKLI EGNQGSQEEQ TKLIEYPHGL QGQAQYDLVP  180
MQKQVEFEYP SLMNGKEQPM VIAPSNLYVG TTAMQMTNEE FLPCAAPLTY PMMSMKNSDF  240
MDLYDLPNMN YAPLMMNPCP MTTDPVNLMN DYGFNNYYAN SSGEMYFCSD PGASTSWLPS  300
NMQSEPHFSS YPPYMMSAS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DNP10.0A0A2G5DNP1_AQUCA; Uncharacterized protein
STRINGAquca_017_00580.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.22e-17M-type_MADS family protein