PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G047300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 439aa    MW: 48682.9 Da    PI: 8.9628
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G047300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-0588110123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C+k F r  nL+ H r H
  Aqcoe5G047300.1.p  88 FVCEVCNKGFQRDQNLQLHRRGH 110
                        89*******************88 PP
2zf-C2H2110.0014165186223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        +C +C+k++   s++k H++++
  Aqcoe5G047300.1.p 165 RCYKCSKMYAVESDYKAHLKVC 186
                        7******************987 PP
3zf-C2H212.40.00047194208519
                        TTTEEESSHHHHHHH CS
            zf-C2H2   5 dCgksFsrksnLkrH 19 
                        dCg++Fsrk+ +++H
  Aqcoe5G047300.1.p 194 DCGRVFSRKDKYETH 208
                        9************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.49E-586111No hitNo description
Gene3DG3DSA:3.30.160.601.1E-587110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.1E-588110IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9788110IPR007087Zinc finger, C2H2
SMARTSM003550.02188110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SMARTSM00355250129159IPR015880Zinc finger, C2H2-like
SMARTSM00355200164184IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MRRLSCCLLQ TQSFSDMLER TFSNSSLSGE ASGSSGTTGV HDFNNLSSIV YSTFPQQPKK  60
RRNLPGHPEP NAEVIALSPR SLLASNRFVC EVCNKGFQRD QNLQLHRRGH NLPWKLNKRI  120
NGEYRKKVYV CPETSCVHHN PSRALGDLTG IKKHFCRKHR EKRLRCYKCS KMYAVESDYK  180
AHLKVCGTRE TICDCGRVFS RKDKYETHRP FCDALAREAG SAQAIPIPPM YHFSQQNQNH  240
DPNLNTSNGF SSPFFLEQLT VLQPSPPLPL ISPPPAQQQP PPPPPPLIFL EQPNITQSAI  300
NTAHMSGSSA LQQASNVDAG SISAAHTLSM GHIASSSLTQ FDTNGFRQIS EVGVESGTPD  360
EISKKYLGCS SEKSSMWKNT DGPTRDFLGL AGEGGRHVKC NNNIHSFTRA IYFGSYDREH  420
LLLRAPGLGY GDAWTGDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-21161225468Zinc finger protein JACKDAW
5b3h_F5e-21161225468Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279249.11e-112PREDICTED: protein indeterminate-domain 12-like
TrEMBLA0A2G5DNI20.0A0A2G5DNI2_AQUCA; Uncharacterized protein
STRINGAquca_017_00545.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.13e-99indeterminate(ID)-domain 12