PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G047300.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 437aa    MW: 48414.6 Da    PI: 9.014
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G047300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-0586108123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C+k F r  nL+ H r H
  Aqcoe5G047300.3.p  86 FVCEVCNKGFQRDQNLQLHRRGH 108
                        89*******************88 PP
2zf-C2H2110.0013163184223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        +C +C+k++   s++k H++++
  Aqcoe5G047300.3.p 163 RCYKCSKMYAVESDYKAHLKVC 184
                        7******************987 PP
3zf-C2H212.40.00046192206519
                        TTTEEESSHHHHHHH CS
            zf-C2H2   5 dCgksFsrksnLkrH 19 
                        dCg++Fsrk+ +++H
  Aqcoe5G047300.3.p 192 DCGRVFSRKDKYETH 206
                        9************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.49E-584109No hitNo description
Gene3DG3DSA:3.30.160.601.0E-585108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.1E-586108IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.02186108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9786108IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
SMARTSM00355250127157IPR015880Zinc finger, C2H2-like
SMARTSM00355200162182IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MNEKVKLLLT TNTDMLERTF SNSSLSGEAS GSSGTTGVHD FNNLSSIVYS TFPQQPKKRR  60
NLPGHPEPNA EVIALSPRSL LASNRFVCEV CNKGFQRDQN LQLHRRGHNL PWKLNKRING  120
EYRKKVYVCP ETSCVHHNPS RALGDLTGIK KHFCRKHREK RLRCYKCSKM YAVESDYKAH  180
LKVCGTRETI CDCGRVFSRK DKYETHRPFC DALAREAGSA QAIPIPPMYH FSQQNQNHDP  240
NLNTSNGFSS PFFLEQLTVL QPSPPLPLIS PPPAQQQPPP PPPPLIFLEQ PNITQSAINT  300
AHMSGSSALQ QASNVDAGSI SAAHTLSMGH IASSSLTQFD TNGFRQISEV GVESGTPDEI  360
SKKYLGCSSE KSSMWKNTDG PTRDFLGLAG EGGRHVKCNN NIHSFTRAIY FGSYDREHLL  420
LRAPGLGYGD AWTGDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-21159223468Zinc finger protein JACKDAW
5b3h_F4e-21159223468Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279249.11e-112PREDICTED: protein indeterminate-domain 12-like
TrEMBLA0A2G5DNI20.0A0A2G5DNI2_AQUCA; Uncharacterized protein
STRINGAquca_017_00545.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.12e-99indeterminate(ID)-domain 12