PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G047300.4.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 423aa    MW: 46812.7 Da    PI: 9.0176
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G047300.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.82e-057294123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C+k F r  nL+ H r H
  Aqcoe5G047300.4.p 72 FVCEVCNKGFQRDQNLQLHRRGH 94
                       89*******************88 PP
2zf-C2H211.10.0013149170223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        +C +C+k++   s++k H++++
  Aqcoe5G047300.4.p 149 RCYKCSKMYAVESDYKAHLKVC 170
                        7******************987 PP
3zf-C2H212.50.00045178192519
                        TTTEEESSHHHHHHH CS
            zf-C2H2   5 dCgksFsrksnLkrH 19 
                        dCg++Fsrk+ +++H
  Aqcoe5G047300.4.p 178 DCGRVFSRKDKYETH 192
                        9************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.14E-57095No hitNo description
Gene3DG3DSA:3.30.160.601.0E-57194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121717.8E-57294IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.977294IPR007087Zinc finger, C2H2
SMARTSM003550.0217294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355250113143IPR015880Zinc finger, C2H2-like
SMARTSM00355200148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MLERTFSNSS LSGEASGSSG TTGVHDFNNL SSIVYSTFPQ QPKKRRNLPG HPEPNAEVIA  60
LSPRSLLASN RFVCEVCNKG FQRDQNLQLH RRGHNLPWKL NKRINGEYRK KVYVCPETSC  120
VHHNPSRALG DLTGIKKHFC RKHREKRLRC YKCSKMYAVE SDYKAHLKVC GTRETICDCG  180
RVFSRKDKYE THRPFCDALA REAGSAQAIP IPPMYHFSQQ NQNHDPNLNT SNGFSSPFFL  240
EQLTVLQPSP PLPLISPPPA QQQPPPPPPP LIFLEQPNIT QSAINTAHMS GSSALQQASN  300
VDAGSISAAH TLSMGHIASS SLTQFDTNGF RQISEVGVES GTPDEISKKY LGCSSEKSSM  360
WKNTDGPTRD FLGLAGEGGR HVKCNNNIHS FTRAIYFGSY DREHLLLRAP GLGYGDAWTG  420
DY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-21145209468Zinc finger protein JACKDAW
5b3h_F5e-21145209468Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279249.11e-112PREDICTED: protein indeterminate-domain 12-like
TrEMBLA0A2G5DNI20.0A0A2G5DNI2_AQUCA; Uncharacterized protein
STRINGAquca_017_00545.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.12e-99indeterminate(ID)-domain 12