PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G047300.5.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 429aa    MW: 47508.5 Da    PI: 9.0158
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G047300.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-0578100123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C+k F r  nL+ H r H
  Aqcoe5G047300.5.p  78 FVCEVCNKGFQRDQNLQLHRRGH 100
                        89*******************88 PP
2zf-C2H2110.0013155176223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        +C +C+k++   s++k H++++
  Aqcoe5G047300.5.p 155 RCYKCSKMYAVESDYKAHLKVC 176
                        7******************987 PP
3zf-C2H212.50.00045184198519
                        TTTEEESSHHHHHHH CS
            zf-C2H2   5 dCgksFsrksnLkrH 19 
                        dCg++Fsrk+ +++H
  Aqcoe5G047300.5.p 184 DCGRVFSRKDKYETH 198
                        9************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.31E-576101No hitNo description
Gene3DG3DSA:3.30.160.601.0E-577100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121717.9E-578100IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9778100IPR007087Zinc finger, C2H2
SMARTSM003550.02178100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355250119149IPR015880Zinc finger, C2H2-like
SMARTSM00355200154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MKSFSDMLER TFSNSSLSGE ASGSSGTTGV HDFNNLSSIV YSTFPQQPKK RRNLPGHPEP  60
NAEVIALSPR SLLASNRFVC EVCNKGFQRD QNLQLHRRGH NLPWKLNKRI NGEYRKKVYV  120
CPETSCVHHN PSRALGDLTG IKKHFCRKHR EKRLRCYKCS KMYAVESDYK AHLKVCGTRE  180
TICDCGRVFS RKDKYETHRP FCDALAREAG SAQAIPIPPM YHFSQQNQNH DPNLNTSNGF  240
SSPFFLEQLT VLQPSPPLPL ISPPPAQQQP PPPPPPLIFL EQPNITQSAI NTAHMSGSSA  300
LQQASNVDAG SISAAHTLSM GHIASSSLTQ FDTNGFRQIS EVGVESGTPD EISKKYLGCS  360
SEKSSMWKNT DGPTRDFLGL AGEGGRHVKC NNNIHSFTRA IYFGSYDREH LLLRAPGLGY  420
GDAWTGDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-21151215468Zinc finger protein JACKDAW
5b3h_F4e-21151215468Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279249.11e-112PREDICTED: protein indeterminate-domain 12-like
TrEMBLA0A2G5DNI20.0A0A2G5DNI2_AQUCA; Uncharacterized protein
STRINGAquca_017_00545.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-99indeterminate(ID)-domain 12