PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G066800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 218aa    MW: 23525 Da    PI: 10.0922
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G066800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.8e-1973122255
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr +  +grW AeIrd +     r r++lg+f+taeeAa+a++ a++ l+g
  Aqcoe5G066800.1.p  73 YYRGVRKRQ-WGRWSAEIRDkV----GRCRHWLGTFDTAEEAAQAYDSAARLLRG 122
                        69****888.**********44....269*********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.27E-2173131IPR016177DNA-binding domain
SMARTSM003805.5E-3173136IPR001471AP2/ERF domain
PROSITE profilePS5103221.66773130IPR001471AP2/ERF domain
CDDcd000187.65E-2974129No hitNo description
Gene3DG3DSA:3.30.730.105.3E-2974130IPR001471AP2/ERF domain
PfamPF008471.1E-1174122IPR001471AP2/ERF domain
PRINTSPR003675.6E-107485IPR001471AP2/ERF domain
PRINTSPR003675.6E-1096112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDKKCGSTGD DNLLDGIAAV VGRQVLFGGG GEGEATTTTS CNSNNSKKQN KKLLDSKATA  60
GSSSSSTPSQ SCYYRGVRKR QWGRWSAEIR DKVGRCRHWL GTFDTAEEAA QAYDSAARLL  120
RGSKARTNFS LPASSYYIPH HHLQPADHHH HHYQPNRKKA RTSSMSSSCV AVTSMAHLIT  180
TTTTTTSTPN QKPTTTTTTS STTTVDQFID LNLGLGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1673131261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.15e-19ERF family protein