PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G079700.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 1064aa    MW: 119897 Da    PI: 9.6735
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G079700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.5e-104784241
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                        rW+ eE  ++++a +++G++ Wk++a+ +  +R+ +++ 
  Aqcoe5G079700.3.p 47 SRWSDEELTRFYRAYRKYGKN-WKKVAANVR-NRSVEMVE 84
                       59*****************99.*********.***99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-103891IPR009057Homeodomain-like
PROSITE profilePS5129310.3544490IPR017884SANT domain
SMARTSM007174.4E-74593IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-64788IPR009057Homeodomain-like
PfamPF002492.3E-84888IPR001005SANT/Myb domain
CDDcd001677.77E-74891No hitNo description
PfamPF065841.9E-29546646IPR033471DIRP domain
SMARTSM011353.0E-51546647IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1064 aa     Download sequence    Send to blast
MAPIRKSRNL NKLSSIVGGK DSPIEDAGCG DKNRKRKRKE SEDILGSRWS DEELTRFYRA  60
YRKYGKNWKK VAANVRNRSV EMVEAVYNEN KAYLCLPDGT ATAFGLISMM SDRYITMESN  120
ESESDEEPRI SQKAQKRARS KSRVNVSRTS VEHGPHLLHS QAVASNSVCL FLLKNRRSTG  180
DGPRIVKKRT PRIPVSYSCN KGDLAKQLSS SKKDPHSEED FNADEVAQGM LALTGALQEE  240
SASQTPNRRK EHMRLSPVRD CQKIHAEAEK VGNKHMSAEK GDRWAGNLGI RRTGKKDSAK  300
DTINTVDVCK KRTKIHKKKP ELEGVKFDDS AVRDTCRMKK KSRKLLSKDE SSALDALHTL  360
ADTLLKLETT SVVESGPKEN NTNRSMSGKD SVPSVCLTPE AKQGIDQPTS RMKKGKRKTI  420
SSKIPKAEVG RLCSEQQKTE KKLIRHQESD SPNADLQRQG NHLPLGRVQV PAANKVKLPT  480
KQRSRRKMHF QKTPIQNRMK STENIRSGQS NGCSSLLHDK AHRIKENLSH CLSCPTLRKW  540
CAFEWFYSAI DYPWYAKREF VEYLNHVGLG HVPKLTRAEW GVIRSSLGKP RRLSQQFLRE  600
EKDKLEQYRE SVRTHHTKLR SGITQPIPWD LARPLSVGQC VFARHPKTGE ICDGKILTVD  660
CNKCRVQFER RELGVELVMD IDCMPVDLPD HVTEVLRKEN IVVNEDLGKY NKSTKTKIMG  720
HMRCSADEIL EDAKGGIIDD LSQDKARARG DDNGPDMANT QSCNLMQIQS READIRALSD  780
LSRALDKKEV LVSELKYMNC EILKYQNNGD GSLKDSELFK NQYVSVLFQL KDANDQVSSA  840
LLYLRQRNTY QQSSPRPWLR PMTRSSSLAE PRSCFDHYAV PREESGSNVV EIVERSRWKA  900
QKMVDAATQA MSSMKEGEDV YTKIGEAIDS TTSWDFGLDP NLQARKSLNP SDPSHNGLPC  960
QNQETSGMSE QKMTDKTIDL ELNSASDVMK LQIPSALISS CVATLLMIQT CTDRQYPPGE  1020
AVQILDSALT SLQPICSQNV PIYRDIQMCM GMVKNQILAL IPT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338RKRKRK
23339RKRKRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241815.10.0PREDICTED: protein ALWAYS EARLY 3-like isoform X1
TrEMBLA0A2G5DM190.0A0A2G5DM19_AQUCA; Uncharacterized protein
STRINGAquca_017_00251.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-154DNA binding