PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G079900.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 351aa    MW: 38258.1 Da    PI: 8.825
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G079900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.34.7e-124974227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                       ++++C +++rtG C yG+rC+F+H++
  Aqcoe5G079900.2.p 49 GEPNCVYYMRTGSCGYGARCRFNHPR 74
                       5799********************96 PP
2zf-CCCH34.92.5e-1195120227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        +++ C+++++t  Ck+G+ CkF+H++
  Aqcoe5G079900.2.p  95 GQPVCQYYLKTRMCKFGAACKFHHPK 120
                        6799********************96 PP
3zf-CCCH31.23.7e-10141166227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+++ +t +Ck+G +CkF+H++
  Aqcoe5G079900.2.p 141 GEKECSYYVKTRQCKFGITCKFHHPQ 166
                        7899********************97 PP
4zf-CCCH36.58.4e-12298324127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C++++rtG+Ck+G++C+++H+p
  Aqcoe5G079900.2.p 298 PGQPECQYYLRTGHCKFGSSCRYHHPP 324
                        5789*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.4694775IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-64774IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-94974IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-65176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-55374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.69593121IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-493120IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-895120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-597119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-498118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981139167IPR000571Zinc finger, CCCH-type
SMARTSM003560.021139166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5141167IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7141166IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6297324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131297325IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9299324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6301325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-5303324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MESSYGKAIT TTSTTTQSDP HSEWNSTGIE ESMRQLVISG KESYPERTGE PNCVYYMRTG  60
SCGYGARCRF NHPRNRSQVA AGLAREGVEY PEREGQPVCQ YYLKTRMCKF GAACKFHHPK  120
YGGGSFTTVQ LNSHGYPLRP GEKECSYYVK TRQCKFGITC KFHHPQPAST SVPAPAPAPA  180
FYQTVQSSLM PSAQQYGVAS NWQVARPPLL SGSYLQGAYG HVLLPSGMVP ISGWNPYPPP  240
VSPVASPSTP SIMGGGPYFG MAQLSPSAPA YAGPYPSLPS SASVTSSVQN ESMFPERPGQ  300
PECQYYLRTG HCKFGSSCRY HHPPEWLTTN TGVLSHMGLP LRLTGWHDSK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241841.11e-155PREDICTED: zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W911e-118C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2G5DLX40.0A0A2G5DLX4_AQUCA; Uncharacterized protein
STRINGAquca_017_00249.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-100C3H family protein