PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G082300.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C2H2

Protein Properties

Length: 590aa MW: 64565.9 Da PI: 8.4408

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G082300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.7e-05	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Aqcoe5G082300.1.p 85 FICEICNKGFQRDQNLQLHRRGH 107 89*******************88 PP
2	zf-C2H2	11.9	0.00071	161	183	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Aqcoe5G082300.1.p 161 WKCDKCSKKYAVQSDWKAHSKTC 183 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-5	84	107	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.47E-6	84	107	No hit	No description
Pfam	PF12171	7.3E-5	85	107	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.845	85	107	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.022	85	107	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	87	107	IPR007087	Zinc finger, C2H2
SMART	SM00355	280	126	156	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.2E-4	149	182	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.47E-6	156	181	No hit	No description
SMART	SM00355	150	161	181	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
MSNITGDSKS FSSGNTGEEE VQQQHQKLQN HFHGTTRTTN SNGSTSQPPL PLPPLKKKRN 60 LPGTPDPSAE VIALSPTTLM ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTSTE 120 IRKRVYICPE TSCVHHNPAR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDWKAHS 180 KTCGTREYKC DCGTIFSRRD SFITHRAFCD ALTEENNKVN QGLLPPMSTA NLHGQVPDFM 240 SSMPPSTSTP LGISEFHQTD QKNPLKSLPH DLMPMPLKSL NMAGGMFSSS TGTLYNGLRS 300 MSSTSSCLQL SPNTSSSFDG LHDNKISGQL SGSAHMSATA LLQKAAQMGA TASSNINSPM 360 MQKSFASSMT NPDQISGMRP STFGGMSSMQ QHSNNSYDHM QSQQTDQTQL VGIDGGGFIN 420 QFLNNNIKGP KDMSSSQYMD TPVGAENEMG VYSGLFMSGG RGSDQHHGFS KNMEQENNSM 480 FQGKSSSSGI GIPGSGRNPA GLSRFSGNGA AASGDVMTVD FLGVGGSRSA NFHEQHHQQP 540 QHHQDQQQEE QESLDFEGMS EQRMQGLHSY HHQQVSQGQT TVEKPIWEV*

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

MSNITGDSKS FSSGNTGEEE VQQQHQKLQN HFHGTTRTTN SNGSTSQPPL PLPPLKKKRN  60
LPGTPDPSAE VIALSPTTLM ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTSTE  120
IRKRVYICPE TSCVHHNPAR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDWKAHS  180
KTCGTREYKC DCGTIFSRRD SFITHRAFCD ALTEENNKVN QGLLPPMSTA NLHGQVPDFM  240
SSMPPSTSTP LGISEFHQTD QKNPLKSLPH DLMPMPLKSL NMAGGMFSSS TGTLYNGLRS  300
MSSTSSCLQL SPNTSSSFDG LHDNKISGQL SGSAHMSATA LLQKAAQMGA TASSNINSPM  360
MQKSFASSMT NPDQISGMRP STFGGMSSMQ QHSNNSYDHM QSQQTDQTQL VGIDGGGFIN  420
QFLNNNIKGP KDMSSSQYMD TPVGAENEMG VYSGLFMSGG RGSDQHHGFS KNMEQENNSM  480
FQGKSSSSGI GIPGSGRNPA GLSRFSGNGA AASGDVMTVD FLGVGGSRSA NFHEQHHQQP  540
QHHQDQQQEE QESLDFEGMS EQRMQGLHSY HHQQVSQGQT TVEKPIWEV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-34	157	220	3	66	Zinc finger protein JACKDAW
5b3h_F	4e-34	157	220	3	66	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010259675.1	0.0	PREDICTED: protein indeterminate-domain 2-like isoform X1
Swissprot	Q9SCQ6	1e-113	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A2G5DLU8	0.0	A0A2G5DLU8_AQUCA; Uncharacterized protein
STRING	Aquca_017_00227.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	5e-99	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Aqcoe5G082300.1.p

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]