PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G100300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 314aa    MW: 34085.2 Da    PI: 4.0245
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G100300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-05260282123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ykC+ C++sF ++ +L+ H ++H
  Aqcoe5G100300.1.p 260 YKCSVCNESFLTQRSLTGHVSKH 282
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.96E-6257286No hitNo description
Gene3DG3DSA:3.30.160.603.7E-4259282IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.034260287IPR007087Zinc finger, C2H2
SMARTSM003550.0028260282IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MENNGDDGNL CSNIWDSLGD LPREMEFIKN LTHPGTTTCD ENSLEMNISN DKLETTSVDS  60
PSPNHVPAVD MGDNLAVSND QVQGGNDHLG SVEGHPMMPT FPATVQGDHH EQQHGSVPSS  120
SNITVLDMSF LPNDLIRLLE LDDSQFLPPE PPVVDDSSTQ TNTSIMASSS TISDPSTTMV  180
LSGSDSLDME NQQDDNYLSY LSSPNELIDS PHLDQILPPE PPVLDDSSTQ ADICTMALSS  240
STITDQSNNP SLGSPTSEPY KCSVCNESFL TQRSLTGHVS KHAKNNLNKA FPKEREENFK  300
RERTVVNSSR YMG*