PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G112700.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 785aa MW: 89281.8 Da PI: 6.5452

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G112700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	102.3	4.8e-32	79	174	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fYn+YA+++GFs+r+s ++s+r+g i++r+ vCs++g+r+e+++ +++++r+r++tr+gCka+++vkk+++gkw v+k+++eHnH Aqcoe5G112700.1.p 79 FYNSYAHRIGFSTRVSVYHRSRRDGAIICRQIVCSRQGFRQERDRGdgdgsnESRSKRQRVVTRVGCKAMIMVKKQDSGKWIVSKFVEEHNH 170 9****************************************9999998889999******************************** PP FAR1 88 elap 91 el+p Aqcoe5G112700.1.p 171 ELVP 174 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-29	79	174	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.2E-31	295	385	IPR018289	MULE transposase domain
Pfam	PF04434	4.3E-10	563	610	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.398	579	611	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.9E-9	586	613	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence Send to blast
MDLASLNLEN ELMEFDIGSG DENDPEIDLD KLGNIENEFD DDIVENPVGD DFFAAEETDS 60 NFDPHEGMEF DSEEAARIFY NSYAHRIGFS TRVSVYHRSR RDGAIICRQI VCSRQGFRQE 120 RDRGDGDGSN ESRSKRQRVV TRVGCKAMIM VKKQDSGKWI VSKFVEEHNH ELVPPDKVHS 180 LRSHRNVSGP ARSLIDTLQA AGIGPSGVMS VLIRESGGLK NVGFTTVDCR NYMSGNRQKT 240 LGSGVQHILD YLKRMREENS AFYYAIQGDS EYSSGNIFWA DASCRMNYKY FGDTVTFDTT 300 YRTNKYRVPF APFSGLNHHG QPILFGCALL FNESEASFKW LFETWLAAMS GKHPISITTD 360 QDRIIRSAVA QVFPDTHHRF CKWNIFMESQ DKLLPVYQSH PSFEAEFRKC INLTESISEF 420 ELYWVSLLKR YNLEENEWLH SMYLARAQWV PVYLRNTFFG EMSITQGSDS INSFFDGYVN 480 ASTSIQLLIK QYEKAIASRH EKEVKAEYDT MNTEPVLKTP SPMERQASSL FTRRIFTKFQ 540 EELVETLAIT ATKIDDTGTV TTYRVAKFGE DHKAHIVTFH VFEMNANCSC QMFEFCGILC 600 RHILAVFRVA NVLTLPSHYV LKRWTRTAKS GVVVDDCAID LPSNTRESSA VRFNNLRQEA 660 IKYVEEGAKS SHIYNVAMNA LKEAAKKVST AKVHGPGVIQ AGHLVNENLE GHVSEANRLG 720 TLQSISADEK DKKILELMNE VDSANQRCEV YRTKLLAVLK DMEQQKLKLL VKAQNVRVSL 780 KELY*

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence Send to blast

MDLASLNLEN ELMEFDIGSG DENDPEIDLD KLGNIENEFD DDIVENPVGD DFFAAEETDS  60
NFDPHEGMEF DSEEAARIFY NSYAHRIGFS TRVSVYHRSR RDGAIICRQI VCSRQGFRQE  120
RDRGDGDGSN ESRSKRQRVV TRVGCKAMIM VKKQDSGKWI VSKFVEEHNH ELVPPDKVHS  180
LRSHRNVSGP ARSLIDTLQA AGIGPSGVMS VLIRESGGLK NVGFTTVDCR NYMSGNRQKT  240
LGSGVQHILD YLKRMREENS AFYYAIQGDS EYSSGNIFWA DASCRMNYKY FGDTVTFDTT  300
YRTNKYRVPF APFSGLNHHG QPILFGCALL FNESEASFKW LFETWLAAMS GKHPISITTD  360
QDRIIRSAVA QVFPDTHHRF CKWNIFMESQ DKLLPVYQSH PSFEAEFRKC INLTESISEF  420
ELYWVSLLKR YNLEENEWLH SMYLARAQWV PVYLRNTFFG EMSITQGSDS INSFFDGYVN  480
ASTSIQLLIK QYEKAIASRH EKEVKAEYDT MNTEPVLKTP SPMERQASSL FTRRIFTKFQ  540
EELVETLAIT ATKIDDTGTV TTYRVAKFGE DHKAHIVTFH VFEMNANCSC QMFEFCGILC  600
RHILAVFRVA NVLTLPSHYV LKRWTRTAKS GVVVDDCAID LPSNTRESSA VRFNNLRQEA  660
IKYVEEGAKS SHIYNVAMNA LKEAAKKVST AKVHGPGVIQ AGHLVNENLE GHVSEANRLG  720
TLQSISADEK DKKILELMNE VDSANQRCEV YRTKLLAVLK DMEQQKLKLL VKAQNVRVSL  780
KELY*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026388675.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2G5EMJ7	0.0	A0A2G5EMJ7_AQUCA; Uncharacterized protein
STRING	Aquca_007_00963.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe5G112700.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]