PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G112900.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 770aa MW: 88762.4 Da PI: 6.5523

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G112900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99	5e-31	72	164	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA+++GFs+r+sk+++s+++g i++r fvC keg+r e+++ +++ +r+ra+tr+gCka+l vk++ +gkw+v+++++eHnHel+ Aqcoe5G112900.1.p 72 FYNSYARRTGFSTRVSKTRRSRKDGAIIQRSFVCAKEGFRVEKERPgvnENRIKRPRAVTRVGCKASLAVKMQASGKWVVSTFVKEHNHELV 163 9**************************************99998887889999**********************************8 PP FAR1 91 p 91 p Aqcoe5G112900.1.p 164 P 164 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-29	72	164	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.4E-31	285	377	IPR018289	MULE transposase domain
Pfam	PF04434	1.2E-11	553	599	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.967	565	601	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.0E-8	576	603	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence Send to blast
MEFEPLNMEN EMMEYDMGYE DDAVDIEHPV DEEEDEIVES SAGKELYIPE SDSNLEPYEG 60 MELESEEAAK AFYNSYARRT GFSTRVSKTR RSRKDGAIIQ RSFVCAKEGF RVEKERPGVN 120 ENRIKRPRAV TRVGCKASLA VKMQASGKWV VSTFVKEHNH ELVPADKVHC LRSHRHVSGS 180 AKSLIDTLQA AGIGPSGIMS ALLKEYGSIS NIGFTERDCR NYMRSSRQRS LGGDTQLLLD 240 YLKHMHASDP GFFYAVQGDD EQYMSNMFWA DQKARQNYTY FGDTVTFDMT YRSNKYRLPF 300 APFTGVNHHG QPVLFGCALL VNESEASFIW LLKTWLTAMS GRPPISITTD YDRVIRSAIT 360 QVLPDTRHRF CKWHIYKEAQ EKLSRVYHEH PHFEAEFHKC VDLAESIEEF ESCWSSLIDT 420 YDLREHEWLR TIHIVRRQWV PVYLRDTFFA EMSITQRTDT MNSYFDGYVN AATSLQQFVK 480 LYEKALETRH EKEVKADFDT MNTTPDLKTP SPMEKQAADL YTKKLFMKFQ EELFETLTFM 540 ATETEDDGAA TIYRVAKFGE DHRVYFVKLN VLEMKATCTC QMFEFSGLLC RHILTVFRVT 600 NVLTLPSSYI LKRWTRNAKS GVVLEERAND PRESHNLRYN TLRHEALKFA DEGAKTIDVY 660 NVAMDSLQEA LKRVALAKKN GGRLPMINGS SREDSDGGQQ WAFGQPQTMD EKEKKIQELS 720 RELNRANRKC ELYRANLLTV LKDIEEQKLQ LSVKVQNIKL GMKDRDQGG*

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence Send to blast

MEFEPLNMEN EMMEYDMGYE DDAVDIEHPV DEEEDEIVES SAGKELYIPE SDSNLEPYEG  60
MELESEEAAK AFYNSYARRT GFSTRVSKTR RSRKDGAIIQ RSFVCAKEGF RVEKERPGVN  120
ENRIKRPRAV TRVGCKASLA VKMQASGKWV VSTFVKEHNH ELVPADKVHC LRSHRHVSGS  180
AKSLIDTLQA AGIGPSGIMS ALLKEYGSIS NIGFTERDCR NYMRSSRQRS LGGDTQLLLD  240
YLKHMHASDP GFFYAVQGDD EQYMSNMFWA DQKARQNYTY FGDTVTFDMT YRSNKYRLPF  300
APFTGVNHHG QPVLFGCALL VNESEASFIW LLKTWLTAMS GRPPISITTD YDRVIRSAIT  360
QVLPDTRHRF CKWHIYKEAQ EKLSRVYHEH PHFEAEFHKC VDLAESIEEF ESCWSSLIDT  420
YDLREHEWLR TIHIVRRQWV PVYLRDTFFA EMSITQRTDT MNSYFDGYVN AATSLQQFVK  480
LYEKALETRH EKEVKADFDT MNTTPDLKTP SPMEKQAADL YTKKLFMKFQ EELFETLTFM  540
ATETEDDGAA TIYRVAKFGE DHRVYFVKLN VLEMKATCTC QMFEFSGLLC RHILTVFRVT  600
NVLTLPSSYI LKRWTRNAKS GVVLEERAND PRESHNLRYN TLRHEALKFA DEGAKTIDVY  660
NVAMDSLQEA LKRVALAKKN GGRLPMINGS SREDSDGGQQ WAFGQPQTMD EKEKKIQELS  720
RELNRANRKC ELYRANLLTV LKDIEEQKLQ LSVKVQNIKL GMKDRDQGG*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010266300.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2G5EME8	0.0	A0A2G5EME8_AQUCA; Uncharacterized protein
STRING	Aquca_007_00960.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe5G112900.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]