PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G119500.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

WOX

Protein Properties

Length: 302aa MW: 33915.5 Da PI: 5.126

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G119500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.5	3.1e-20	123	183	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le F + + +ps++++++++++l ++e++V++WFqNrRa+ k+ Aqcoe5G119500.1.p 123 RQRWTPTPMQLQILEHIFDQgTGTPSKQKIKDITNELtqhgPISETNVYNWFQNRRARSKR 183 89***************99***************99***************97 PP
2	Wus_type_Homeobox	100.5	1.2e-32	122	185	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G i+++NV++WFQNr+aR+++kq Aqcoe5G119500.1.p 122 TRQRWTPTPMQLQILEHIFDQGTGTPSKQKIKDITNELTQHGPISETNVYNWFQNRRARSKRKQ 185 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-16	117	186	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.382	119	184	IPR001356	Homeobox domain
SMART	SM00389	3.0E-13	121	188	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-17	122	185	IPR009057	Homeodomain-like
Pfam	PF00046	5.1E-18	123	183	IPR001356	Homeobox domain
CDD	cd00086	5.04E-12	123	185	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MDLSRNVLSK VQLRGGGGGG EGIEEEEEEQ QQQVRLMDWE KQQQQQQESG SSSSGIGLMY 60 VKVMTDEQME LLRKQISIYA TICEQLVEMH KAITSQQDFA GMRLGNVYFD PLTTSTGHKI 120 STRQRWTPTP MQLQILEHIF DQGTGTPSKQ KIKDITNELT QHGPISETNV YNWFQNRRAR 180 SKRKQHGPAT NNGESEVETE VESPKEKRAK PENFQLNENH ALREDEICFQ SSGRSSELHS 240 LDQSDKGEST FPSDGCSKSS GSLGHVSFYD TVLANPRIDH LLGKMELPGG YNPYQQGDGY 300 D*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	184	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270477.1	1e-124	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	7e-94	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2G5EMA5	0.0	A0A2G5EMA5_AQUCA; Uncharacterized protein
STRING	Aquca_007_00901.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-84	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Aqcoe5G119500.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]