PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G121600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 195aa    MW: 21956.2 Da    PI: 10.7325
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G121600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0016988221
                       EETTTTEEESSHHHHHHHHH CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                       +C+ C+k F ++  L  H+r
  Aqcoe5G121600.1.p 69 PCSVCSKKFLSWKALFGHMR 88
                       6******************8 PP
2zf-C2H213.50.00021156178123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C k+F ++  L rH  +H
  Aqcoe5G121600.1.p 156 FECSSCQKVFGSHQALGRHRASH 178
                        89******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-56793No hitNo description
SMARTSM003550.00996890IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.856895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
PfamPF139127.4E-77092IPR007087Zinc finger, C2H2
SuperFamilySSF576676.7E-5155186No hitNo description
PROSITE profilePS5015710.866156183IPR007087Zinc finger, C2H2
SMARTSM003550.057156178IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-7156179IPR007087Zinc finger, C2H2
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEFANSSNQD SFNKQFESSQ FAAAIGPCKN HRKKRLKIAR ISNVATMMNR FSKPKFGKKS  60
ELNAVKVIPC SVCSKKFLSW KALFGHMRCH PERQWRGINP PPNYQGNMSS QGTTKSSPRT  120
YFNKKDHDAA ACLLMLANDS MRKLWGAGHL DSNCGFECSS CQKVFGSHQA LGRHRASHKN  180
VKGLFCNCQE HRQR*
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893038.11e-48zinc finger protein ZAT3
SwissprotO654992e-40ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A3S3Q3783e-49A0A3S3Q378_9MAGN; Zinc finger protein ZAT3
STRINGPOPTR_0009s16770.11e-48(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.16e-43C2H2-like zinc finger protein