PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G135500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family WRKY
Protein Properties Length: 245aa    MW: 27673.8 Da    PI: 7.4446
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G135500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.45.9e-33163220259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK vk+s+fprsYYrCt ++C vkk+vers+ed ++v++tYeg+H+h 
  Aqcoe5G135500.1.p 163 EDGYRWRKYGQKAVKNSPFPRSYYRCTNTTCGVKKRVERSSEDSTLVVTTYEGQHTHM 220
                        8********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-33147222IPR003657WRKY domain
SuperFamilySSF1182902.88E-28154220IPR003657WRKY domain
PROSITE profilePS5081130.24157222IPR003657WRKY domain
SMARTSM007744.9E-38162221IPR003657WRKY domain
PfamPF031062.9E-26163219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEMGNFKEFE EQIASYNNTT SSSLSSGILD MWNTSDYCDK SSLGFMDLLG FDPAYSFLFN  60
SQSPPQQPSS VFPSSLPSTT TSTLVETSEV LNLPATPNSS SISSSWAEPT SDDQANKLVV  120
KDEEEKEELC KSKKQLKPQK KYQKRQKERR FAFVTKSEVD HLEDGYRWRK YGQKAVKNSP  180
FPRSYYRCTN TTCGVKKRVE RSSEDSTLVV TTYEGQHTHM NPVMPRGGVH SGYQANATTF  240
NMPVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-271552231078Probable WRKY transcription factor 4
2lex_A3e-271552231078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279385.13e-70PREDICTED: probable WRKY transcription factor 48
SwissprotO229002e-49WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A2G5EZ580.0A0A2G5EZ58_AQUCA; Uncharacterized protein
STRINGAquca_003_00498.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-42WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]